1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtgtatttactcttaatatttggcactttgcaagtatttcagttcatcaatggccttatcattgtcttcatttcttcttttgtcctttcctgccttgcagATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACAAGAAACGTGTTAATGAATTTGGTTTTGGAGGCGAGGATGATCAGGTTGT
species | Glycine max |
transcript | GLYMA06G16940.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATG ATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACAEST: gi|192295216|gb|FG986935.1|FG986935
genomic: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATGgtaagattat ... tgccttgcagATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACA
EST: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATG ATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACAEST: gi|9258683|gb|BE346830.1|BE346830
genomic: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATGgtaagattat ... tgccttgcagATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACA
EST: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATG ATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACAEST: gi|6914981|gb|AW396511.1|AW396511
genomic: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATGgtaagattat ... tgccttgcagATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACA
EST: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATG ATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACAEST: gi|10252774|gb|BE820540.1|BE820540
genomic: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATGgtaagattat ... tgccttgcagATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACA
EST: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATG ATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACAEST: gi|57575336|gb|CX548311.1|CX548311
genomic: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATGgtaagattat ... tgccttgcagATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACA
EST: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATG ATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACAEST: gi|26047917|gb|CA784557.1|CA784557
genomic: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATGgtaagattat ... tgccttgcagATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACA
EST: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATG ATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACA
genomic: CTTTGTCATTAAAATGCCAACACTCCATCGGCTTTCTGTCTTCCGTGATGgtaagattat ... tgccttgcagATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACA
atcaatggccttatcattgtcttcatttcttcttttgtcctttcctgccttgcagATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACAAGAAACGTGTTAATGAATTTGGTTTTGGAGGCGAGGATGATCAGGTTGT
ccttatcattgtcttc CT-rich tract
ttatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtatttactcttaatatttggcactttgcaagtatttcagttcatcaatggccttatcattgtcttcatttcttcttttgtcctttcctgccttgcagATCTTATCTTTGTCATATACTTATACCAGAGGTGGATTTATAAAGTGGACAAGAAACGTGTTAATGAATTTGGTTTTGGAGGCGAGGATGATCAGGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - tgcaagt