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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgattaattgctaattttgtttaccatccttcagtctctaggtaatttgaagtcagagtgccggaatattttcatatctatttcactttgtccagGGTTTGGAGGTGATGCTAATAACCCTCATTTGCCTCATAATCATGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACA

Basic information

species Glycine max
transcript GLYMA06G15140.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15140.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv07s0031g01540.t01 (Vitis vinifera), 3'ss of exon 12
---------------gtaatgattaat-tgctaattttgtttaccatccttcagtctctaggtaatt-----tgaagtcagagtgccggaatatttt---cata---tctatttcactttgtccagGGTTTGGAGGTGATGCTAATAACCCTCATTTGCCTCATAATCATGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACA
                |    ||  || | ||  | || |||   ||  || ||||| |||| | ||     || |||||  |    | || |||||   |||    |||||||  ||| ||||||| |||||  |||||||  ||||||| ||||||||||||||||| |||   ||| ||||||| ||||| |||||||||||||||||||||
gtaataatttaatttctggaaatagatgtacttctgttcttttaaatagtt-agtctttaggaagttagccttgcagtcaacgaagtgtaacattttagtcatgctctctatttt-cttggtccagGTTTTGGGAGTGATGCAGATAACCCACATTTGCCTCATAATCACGAGCAAAATGAAGTTGTTTATACTGGGACTCATGACAATGACACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtaatttgaagtcagagtgccggaatattttcatatctatttcactttgtccagGGTTTGGAGGTGATGCTAATAACCCTCATTTGCCTCATAATCATGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACA
                                        tttcacttt  CT-rich tract
                        aatattttcatatcta  TA-rich tract