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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtattcttgtctttaaaaattgttcagggactattgatggctatctcatcatctgaaaacaaaagtaatctctcctagtttctttatgcagAGTATTATAGCTGATATGCGCAAGGTTTTGGCAAAAAATCCTCAAGTAGAGCAGAAAAAATTGCACAGAAGGGTTTTTCTAGAGAATATTGATCCAGAAA

Basic information

species Glycine max
transcript GLYMA06G10050.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10050.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv18s0001g07500.t01 (Vitis vinifera), 3'ss of exon 11
------------------gtgagtattcttgtct-ttaaaaattgttcag--ggactattgatggctatctcatcatctgaaaacaaaagtaatctctcctagtttctttatgcagAGTATTATAGCTGATATGCGCAAGGTTTTGGCAAAAAATCCTCAAGTAGAGCAGAAAAAATTGCACAGAAGGGTTTTTCTAGAGAATATTGATCCAGAAA
                   |   | | | ||||   || |  ||| | |   |  |  ||  |     ||   |||  | |    |  | |    ||  ||  |||||     |||| |||| ||||||||||||| |||||||| || ||||||||||||||||||||| |||  ||||| ||||| || ||||| ||  ||||||||||||| |
gtgagtgagcaaaaattgctttatctacctgtcaactagatcttgcttacttgagcacttctttttggtcctttcacttcatttgatgaattgggtcctctcttttctgctcacagAATATTGTAGCTGATATGCGTAAGGTTTTAGCCAAAAATCCTCAAGTAGAGCAGCAAAGGTTGCATAGAAGAGTGTTTCTGGACTATATTGATCCAGAGA

upper sequence: GLYMA06G10050.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv18s0001g07520.t01 (Vitis vinifera), 3'ss of exon 8
------------------gtgagtattcttgtct-ttaaaaattgt----tcagggact-attgatgg--ctatctcatcatctgaaaacaaaagtaatctctcctagtttctttatgcagAGTATTATAGCTGATATGCGCAAGGTTTTGGCAAAAAATCCTCAAGTAGAGCAGAAAAAATTGCACAGAAGGGTTTTTCTAGAGAATATTGATCCAGAAA
                  ||   | | | | ||   || |  ||||    | | | |||   |  |||  || || | |||| |||  |     || ||||||     |||||   | |||| | || ||||||||||||||||||||||  | |||||||||||| |||||||| |||  ||||| ||||| || ||||| ||  |||| |||||||| |
gtgagtgagcaaaaattggtttatctacctctcaactagatcttgtctacttaagcacttggttttggtcctttcccttcatttgatgaattgggttatctct-----tttctggttacagAATGTTGTAGCTGATATGCGCAAGGTTTTATCCAAAAATCCTCAAATAGAGCAGCAAAGGTTGCATAGAAGAGTGTTTCTGGACTATATCGATCCAGAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggctatctcatcatctgaaaacaaaagtaatctctcctagtttctttatgcagAGTATTATAGCTGATATGCGCAAGGTTTTGGCAAAAAATCCTCAAGTAGAGCAGAAAAAATTGCACAGAAGGGTTTTTCTAGAGAATATTGATCCAGAAA
 tattgat  putative branch site (score: 3)
                                tctctcctagtttctt  putative PPT
                   aaaacaaaagtaat  TA-rich tract