1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aatgtcaattatgttgaacacgtgtttgacaacccttatatatagttatgcttttatgccgaaattccaaatgacttaacatgcacggtttgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGATGCGATACATGCAGCTGTAACCCGAGTTGTCTAAAACATGTTGACAACA
species | Glycine max |
transcript | GLYMA06G08670.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATTTGATGG GAGGATTAGCATGGCTGGTTTGAGTTCCAAAACTGTCCCACTTTTGGCGGAEST: gi|21995197|gb|BQ786725.1|BQ786725
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAACATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|6725700|gb|AW310099.1|AW310099
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|4396219|gb|AI495216.1|AI495216
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAG-ATTAGCAEST: gi|209719287|gb|BW679816.1|BW679816
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|192307221|gb|FK001221.1|FK001221
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATTTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTTTGGCGGAEST: gi|8285275|gb|BE022834.1|BE022834
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|254340295|gb|GR858420.1|GR858420
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|15662685|gb|BI700056.1|BI700056
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|7590445|gb|AW706197.1|AW706197
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAATTCCATATATACATAACATCTGATGG GAGGATTANCATGGCTGGTCTGAATTCCAAAACTGTCCCACTTCTAGCAGAEST: gi|4293232|gb|AI442018.1|AI442018
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|8403661|gb|BE059295.1|BE059295
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|14011522|gb|BG726444.1|BG726444
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTC-GAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|37994228|gb|CF805974.1|CF805974
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|209714939|gb|BW650785.1|BW650785
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|14011517|gb|BG726439.1|BG726439
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTC-GAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|254340294|gb|GR858419.1|GR858419
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAA-CTGTCCCACTTCTGGCGGAEST: gi|214003944|gb|DB985213.1|DB985213
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|6846499|gb|AW348789.1|AW348789
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|209696908|gb|BW660473.1|BW660473
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|254323228|gb|GR840033.1|GR840033
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|6848342|gb|AW350632.1|AW350632
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|19053666|gb|BM732333.1|BM732333
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAATAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGAEST: gi|17963124|gb|BM269877.1|BM269877
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
EST: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGG GAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
genomic: CAAGTTTCCTTCATGACTAAAGAGTTCCATATATACATGACATCTGATGGgtaagatact ... tgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGA
ttatgcttttatgccgaaattccaaatgacttaacatgcacggtttgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGATGCGATACATGCAGCTGTAACCCGAGTTGTCTAAAACATGTTGACAACA
acttaac putative branch site (score: 3)
tttgtttt putative PPT
tttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtcaattatgttgaacacgtgtttgacaacccttatatatagttatgcttttatgccgaaattccaaatgacttaacatgcacggtttgttttgcagGAGGATTAGCATGGCTGGTCTGAGTTCCAAAACTGTCCCACTTCTGGCGGATGCGATACATGCAGCTGTAACCCGAGTTGTCTAAAACATGTTGACAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG