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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatcaccatttcacctatggtttagtttaagcatgtctttgcttcctctatcttttttatgacaattttctctatttgcagCTTCTGTGGGGCTATCATTCTTGCAGTTCACTAACATGAACTCAATGAGGAACCTCTTTATTCTTGGTGTAGCCCTTTTCTTAGGTTTTTCTGTTCCTGA

Basic information

species Glycine max
transcript GLYMA06G06840.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G06840.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os09g15170.1 (Oryza sativa), 3'ss of exon 12
gtgagtatcaccatttcacctatggtttagtttaagcatgtctttgcttcctctatcttttttatga----------caattttctctatttgcagCTTCTGTGGGGCTATCATTCTTGCAGTTCACTAACATGAACTCAATGAGGAACCTCTTTATTCTTGGTGTAGCCCTTTTCTTAGGTTTTTCTGTTCCTGA
|| || | | | |    ||  |||    | |       | | || ||||  |  || | ||| |||           || |||  | | | | ||||| ||||||| ||||| || ||||| ||||| ||||||||||||||| | |||||||| ||| |||||||  |||| ||  | || || ||  | || ||
gtaagcagcccaaacatac--atgacaaaat---gattttttttcgctttttaaatgtatttaatggacagtacactcattttattgtgtcttcagCTGCTGTGGGACTATCCTTTTTGCAATTCACCAACATGAACTCAATGCGCAACCTCTTCATTGTTGGTGTCTCCCTCTTTCTTGGCTTATCAATACCAGA

upper sequence: GLYMA06G06840.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os01g55500.2 (Oryza sativa), 3'ss of exon 11
gtgagtatcaccatttcacctatggtttagtttaagcatgtctttgcttcc-tctatcttttttatgacaattttctct-atttgcagCTTCTGTGGGGCTATCATTCTTGCAGTTCACTAACATGAACTCAATGAGGAACCTCTTTATTCTTGGTGTAGCCCTTTTCTTAGGTTTTTCTGTTCCTGA
||  ||  | |     || ||   |    |  |||  | | |  || ||   |   | | |   |       ||| | | | || ||||  | |||||||| || ||||||||||| |||||||||||||| ||| | |||||||||||  | |||||  || | ||  | ||  | ||||| || ||
gttggttaccctgcgccatctgatgc---gagtaaatacgccactgtttttgttcttgtctcacacatttgctttgtttgactttcagCGGCAGTGGGGCTCTCCTTCTTGCAGTTTACTAACATGAACTCCATGCGCAACCTCTTTATCGTCGGTGTCTCCATCTTTCTTGGCCTATCTGTGCCCGA

upper sequence: GLYMA06G06840.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G437859_T04 (Zea mays), 3'ss of exon 12
gtgagtatcaccatttcacctatggtttagtttaagcatgtctttgcttcctctatctttttta-tgacaa-ttttctct-atttgcagCTTCTGTGGGGCTATCATTCTTGCAGTTCACTAACATGAACTCAATGAGGAACCTCTTTATTCTTGGTGTAGCCCTTTTCTTAGGTTTTTCTGTTCCTGA
||  ||    |  ||||     || |   ||       |||  |    | |  |      |    ||||   |||||||| | |  ||||| | |||||||| || ||| | |||||||||||||||||||| ||| | |||||||||||  | || ||  || | ||| | ||  | || || || ||
gttggtcatcctgtttccttcctgatgatgtgctttggtgtaatgcaatgcaatgctgcctgggctgacggcttttctctgactctcagCTGCGGTGGGGCTGTCCTTCCTACAGTTCACTAACATGAACTCCATGCGCAACCTCTTTATCGTCGGCGTCTCCATCTTCCTTGGCCTGTCCGTCCCGGA

upper sequence: GLYMA06G06840.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv10s0003g01460.t01 (Vitis vinifera), 3'ss of exon 12
gtgagtatcaccatttcacctatggtttagtttaagcatgtctttgcttcctctatcttttttatgacaattttct-ctatttgcagCTTCTGTGGGGCTATCATTCTTGCAGTTCACTAACATGAACTCAATGAGGAACCTCTTTATTCTTGGTGTAGCCCTTTTCTTAGGTTTTTCTGTTCCTGA
|||||||| |  ||  |   | || |||  ||   | || ||||  |||   | || |  |   |||  || | ||  |  || |||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||| ||    ||||| ||  | ||| | ||||| ||  |||||||
gtgagtattagtatcactattttgttttgattcctgtat-tcttaactttg-caatttggtggttgaatatatactgttgctttcagCTTCTGTGGGGCTATCATTTTTGCAATTTACAAACATGAACTCAATGAGGAACCTCTTCATCACGGGTGTGGCTTTCTTCCTGGGTTTGTCCATTCCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagcatgtctttgcttcctctatcttttttatgacaattttctctatttgcagCTTCTGTGGGGCTATCATTCTTGCAGTTCACTAACATGAACTCAATGAGGAACCTCTTTATTCTTGGTGTAGCCCTTTTCTTAGGTTTTTCTGTTCCTGA
                                       ttttctctatttgc  CT-rich tract
                      tatcttttttatgaca  TA-rich tract