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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactgtacctatgtcctgcccataacaaccatcctttgatctcttttcacccgtgtggtgtctctcatgatcttttccattgtcaatctcacgtttacagGAAAATGGTTACCAACTGCTTTTTCTCAGTGCTCGTTCAATTTCTCAGGCCTATATTACACGGCAATTCTTAGTTAACCTTAAACAG

Basic information

species Glycine max
transcript GLYMA06G04230.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G04230.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv18s0001g10680.t01 (Vitis vinifera), 3'ss of exon 7
------aactgtacctatgtcctgcccataacaaccatcctttgatctcttttcacccgtgtggtgtctctcatgatctt-ttccattgtcaatctcacgttt-acagGAAAATGGTTACCAACTGCTTTTTCTCAGTGCTCGTTCAATTTCTCAGGCCTATATTACACGGCAATTCTTAGTTAACCTTAAACAG
        | ||  ||||    ||   | ||||   |     ||| |   || || | |  |  ||||| |||  | | | ||| ||| |      || ||||  ||||||||||| || ||| ||||||| || ||||| ||  |||||||||||||||||   ||  ||||||| ||| | || ||||| |||
ttggtatgcagtttctattcattgtatacaaca--taattcatga-caagttacaacagaatt-tgtctttcaaaaacctattctattcttg----catgttttgcagGAAAATGGATATCAATTGCTTTTCCTTAGTGCACGAGCAATTTCTCAGGCCTATCACACTAGGCAATTTTTATTCAATCTTAAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426468|gb|CA937988.1|CA937988
EST:     GTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCAATCAAG                         GAAAATGGTTACCAACTGCTTTTTCTCAGTGCTCGTTCAATTTCTCAGGCC
genomic: GTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCAATCAAGgtttgcttat ... acgtttacagGAAAATGGTTACCAACTGCTTTTTCTCAGTGCTCGTTCAATTTCTCAGGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacccgtgtggtgtctctcatgatcttttccattgtcaatctcacgtttacagGAAAATGGTTACCAACTGCTTTTTCTCAGTGCTCGTTCAATTTCTCAGGCCTATATTACACGGCAATTCTTAGTTAACCTTAAACAG
                                        atctcac  putative branch site (score: 3)
                        atctttt  TA-rich tract