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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattttcatcattatttgctgttggtattttacatatgaatgctaaatttggtaatatgcttatggctgctaactgattgattgacaccattctctttgttttgttttttacagTGTCACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTCTCGTGATTCTCCTTGCTCGATGACAGAAATGAACAATCCTCAGTCTCCC

Basic information

species Glycine max
transcript GLYMA06G03970.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23052843|gb|BU577334.1|BU577334
EST:     TCAGCATCCATTCGTGCATGGTTTTTTAACAAAACTCATAATTTAATAGG                         TGTCACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTC
genomic: TCAGCATCCATTCGTGCATGGTTTTTTAACAAAACTCATAATTTAATAGGgtatattttc ... ttttttacagTGTCACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTC
EST: gi|21889779|gb|BQ742992.1|BQ742992
EST:     TCAGCATCCATTCGTGCATGGTTTTTTAACAAAACTCATAATTTAATAGG                         TGTCACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTC
genomic: TCAGCATCCATTCGTGCATGGTTTTTTAACAAAACTCATAATTTAATAGGgtatattttc ... ttttttacagTGTCACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTC
EST: gi|22933522|gb|BU550661.1|BU550661
EST:     TCAGCATCCATTCGTGCATGGTTTTTTAACAAAACTCATAATTTAATAGG                         TGTCACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTC
genomic: TCAGCATCCATTCGTGCATGGTTTTTTAACAAAACTCATAATTTAATAGGgtatattttc ... ttttttacagTGTCACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTC
EST: gi|9901097|gb|BE610065.1|BE610065
EST:     TCAGCATCCATTCGTGCATGGTTTTTTAACAAAACTCATAATTTAATAGG                         TGTCACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTC
genomic: TCAGCATCCATTCGTGCATGGTTTTTTAACAAAACTCATAATTTAATAGGgtatattttc ... ttttttacagTGTCACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTC
EST: gi|18733639|gb|BM527721.1|BM527721
EST:     TCAGCATCCATTCGTGCATGGTTTTTTAACAAAACTCATAATTTAATAGG                         TGTCACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTC
genomic: TCAGCATCCATTCGTGCATGGTTTTTTAACAAAACTCATAATTTAATAGGgtatattttc ... ttttttacagTGTCACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatggctgctaactgattgattgacaccattctctttgttttgttttttacagTGTCACTTCGAAAAAATATGTTTCGGAGGATTCTAATCATGTCACATCTTCTCGTGATTCTCCTTGCTCGATGACAGAAATGAACAATCCTCAGTCTCCC
                            ccattctctttgtttt  CT-rich tract
                                    tttgttttgtttttta  TA-rich tract