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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttacttgattatatttgcagtggttttctctaaaatttatataatatttttggggatatttggtgtcaacttaaaatctcatactttactctttcagCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAG

Basic information

species Glycine max
transcript GLYMA06G01520.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01520.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 11
gttttacttgattatatttgcagtggttttctctaaaatttatataatatttttggggatatttggtgtcaacttaaaatctcatactt---tactcttt--cagCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAG
          ||| |||      || || | | ||||| ||   || | ||   | | ||   | ||    ||||||  | | ||  ||   |||||| |  ||||| || |||||||||||| | || || ||||||||||||||||| ||||||
--------gtattgtatagcttctgtttgtttttaaaaatt---tagttttcaagtgaattactagttatgacttaagttgtaatttttctctactctgtgacagCCACGGATATTTGTTCTGTTGAGACGCTGTCTTTTTGACAGTGACGATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207782187|gb|GD753758.1|GD753758
EST:     GTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCTGTTGATGTGTTAAAG                         CCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAG
genomic: GTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCTGTTGATGTGTTAAAGgttttacttg ... actctttcagCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAG
EST: gi|7693136|gb|AW761233.1|AW761233
EST:     GTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCTGTTGATGTGTTAAAG                         CCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAG
genomic: GTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCTGTTGATGTGTTAAAGgttttacttg ... actctttcagCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAG
EST: gi|193518991|gb|FK472796.1|FK472796
EST:     GTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCTGTTGATGTGTTAAAG                         CCCCGCATATTTGTTCTGCTAAGGCGATGTCTTT
genomic: GTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCTGTTGATGTGTTAAAGgttttacttg ... actctttcagCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTT
EST: gi|151397771|gb|EV267644.1|EV267644
EST:     GTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCTGTTGATGTGTTAAAG                         CCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAG
genomic: GTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCTGTTGATGTGTTAAAGgttttacttg ... actctttcagCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatttttggggatatttggtgtcaacttaaaatctcatactttactctttcagCCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAG
                                       tactttactctttc  CT-rich tract
                         aacttaaaat  TA-rich tract