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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taagagttgagctttgttgcttgacagtgcaacttgatttcttgatttgaattgtttaatgcaattttctccagaataattaaattgaatttcaatacagGAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTCGGATGTGGGTAGCACTGTCTGTCTTCTTCTTGACCGTATTAACTCTTTT

Basic information

species Glycine max
transcript GLYMA06G01260.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298198144|gb|HO039683.1|HO039683
EST:     TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAG                         GAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTC
genomic: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTC
EST: gi|57575650|gb|CX548625.1|CX548625
EST:     TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAG                         GAGCACCTCCTCCTCTTGACACTCAGAAAACTCNTGATGGGCTTCAAGCTC
genomic: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTC
EST: gi|254335758|gb|GR847286.1|GR847286
EST:     TTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAG                         GAGCACCTCCTCCTCTTGACACTCAGAAAACT-CTGATGGGCTTCAAGCTC
genomic: TTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTC
EST: gi|12490007|gb|BG043528.1|BG043528
EST:     TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAG                         GAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTC
genomic: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTC
EST: gi|254335757|gb|GR847285.1|GR847285
EST:     TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAG                         GAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTC
genomic: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTC
EST: gi|208240567|gb|GE035995.1|GE035995
EST:     TCTCTACAGAGGTCTTACACCTCTAAAG                         GAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTC
genomic: TCTCTACAGAGGTCTTACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTC
EST: gi|209697051|gb|BW667041.1|BW667041
EST:     TACACCTCTAAAG                         GAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTC
genomic: TACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaattgtttaatgcaattttctccagaataattaaattgaatttcaatacagGAGCACCTCCTCCTCTTGACACTCAGAAAACTCCTGATGGGCTTCAAGCTCGGATGTGGGTAGCACTGTCTGTCTTCTTCTTGACCGTATTAACTCTTTT
        gtttaat  putative branch site (score: 4)
                           agaataattaaattga  TA-rich tract