Sequence
atgc intronic sequence ATGC exonic sequencegtgtttatgcaacctagtttaagctttctagcatacctattatgattgtgcaaaatatcttactgcactgaaaaatgaggataagagtcgtttaacatgcacctatgtttatgtgctgtatattattttttctcatttgaatgaaccttaaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAGAAACTCTGGTAATGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACACTC
Basic information
species | Glycine max |
transcript | GLYMA05G37960.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G37960.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G63430.2 (Arabidopsis thaliana), 3'ss of exon 11
gtgtttatgcaacctagtttaagctttctagcatacctattatgattgtgcaaaatatcttactgcactgaaaaatgaggataagagtcgtttaacatgcacct-atgtttatgtgctgtatattattttttctcatttgaatgaaccttaaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAGAAACTCTGGTAATGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACACTC
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--------------------------------------------gtaaagtaaagtgagac-ctgc-ttgttatctgagtaatacaattagctaagctaagctttatgttcacattct-----ttcttttttctgactt-------tctctgatg-cagCTGGTTGATTTCGAATGCTGGAAGACAATTCTTGCAAGATCAGAAAAGAATTTGAGAAATATTAGTAGCCAGGGTTCGATATGTGTACTCCCAAACGGAA
upper sequence: GLYMA05G37960.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv02s0025g03700.t01 (Vitis vinifera), 3'ss of exon 11
gtgtttatgcaacctagtttaagctttctagcatacctattatgattgtgcaaaatatcttactgcactgaaaaatgaggataagagtcgtttaacatgcacctatgtttatgtgctgtatattattttttctcatttgaatgaaccttaaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAGAAACTCTGGTAATGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACACTC
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------------------------------------------------ttcctggtttttgaattctcgttgaaatgag-atgata-caactctaca---gcttaaaacaaatttctgaattttgatgatgttctcttgaat-----ttgtactgcagCTAGTTGACTTTGAAAGTTGGAAGTCAATTCTTTCAAGATCAGAAAAGAACTCAGGCTCCATTGGCAGCCAAGGTGCCATCTGTGTTCTTCCAAATTCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151405408|gb|EV275222.1|EV275222EST: CAGAATTGAATTCCAATGCCGTTTACCTCACAGAAGATTTTTCCCCTAAG CTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAGAAAC
genomic: CAGAATTGAATTCCAATGCCGTTTACCTCACAGAAGATTTTTCCCCTAAGgtgtttatgc ... taaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAGAAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgtttatgtgctgtatattattttttctcatttgaatgaaccttaaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAGAAACTCTGGTAATGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACACTC
tatattattttttctc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtttatgcaacctagtttaagctttctagcatacctattatgattgtgcaaaatatcttactgcactgaaaaatgaggataagagtcgtttaacatgcacctatgtttatgtgctgtatattattttttctcatttgaatgaaccttaaatttcagCTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAGAAACTCTGGTAATGTTAGTAGCCAGGGTGCTGTTTGTGTTCTACCAAACACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT