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gttagtttctattggtttcacaattttaactggtatctgttgctttgcattggatttgcagcactttccttgttgtgttattgtaaaccattattcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGG
species | Glycine max |
transcript | GLYMA05G37850.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG GTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGGEST: gi|13480024|gb|BG509367.1|BG509367
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG GTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGGEST: gi|9900602|gb|BE609570.1|BE609570
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG GTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGGCCTTGEST: gi|120494105|gb|EH222272.1|EH222272
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGA-GGGCCTTG
EST: ATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG GTCAGNCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGGEST: gi|19453403|gb|BM954813.1|BM954813
genomic: ATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG GTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGGEST: gi|120493888|gb|EH222055.1|EH222055
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG GTCAGGCTGAAGAGGTATTTGGAGAEST: gi|207704837|gb|GD684644.1|GD684644
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGA
EST: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAG GTCAGGCTGAAGAGGTATTTGGAGATGCGAGGTGCTGATGGAGGGCCTTGGEST: gi|192299708|gb|FG990032.1|FG990032
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: GGGAAAATCACTTGACAACTATATTTCCTGAG GTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGGEST: gi|192303005|gb|FG997021.1|FG997021
genomic: GGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
EST: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGGG GTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
genomic: TACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGgttagtttct ... ttcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGG
attggatttgcagcactttccttgttgtgttattgtaaaccattattcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGG
ccattattcttttc CT-rich tract
attattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttctattggtttcacaattttaactggtatctgttgctttgcattggatttgcagcactttccttgttgtgttattgtaaaccattattcttttcagGTCAGGCTGAAGAGGTATTTGGAGATGAGAGGTGCTGATGGAGGGCCTTGGAGAAGATTGTGTGCTTTACCAGCATTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA