1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gttagtttttgtacaaaatgttgcctattgttgcttgcatttgttttatactcgaaatgctatattgcctgtagctaaaggatgtcttctccctactcagGAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGATATCACTTCAATTTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCA
species | Glycine max |
transcript | GLYMA05G36040.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG GAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGAEST: gi|58017252|gb|CX703994.1|CX703994
genomic: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAGgtatggctca ... ccctactcagGAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGA
EST: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG GAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGAEST: gi|58017426|gb|CX704168.1|CX704168
genomic: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAGgtatggctca ... ccctactcagGAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGA
EST: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG GAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGAEST: gi|58020763|gb|CX707505.1|CX707505
genomic: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAGgtatggctca ... ccctactcagGAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGA
EST: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG GAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGAEST: gi|209703851|gb|BW670733.1|BW670733
genomic: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAGgtatggctca ... ccctactcagGAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGA
EST: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG GAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGAEST: gi|10253962|gb|BE821672.1|BE821672
genomic: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAGgtatggctca ... ccctactcagGAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGA
EST: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG GAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGAEST: gi|5753594|gb|AI960881.1|AI960881
genomic: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAGgtatggctca ... ccctactcagGAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGA
EST: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG GAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGAEST: gi|213604268|gb|DB983440.1|DB983440
genomic: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAGgtatggctca ... ccctactcagGAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGA
EST: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAG GAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGA
genomic: ATGGTTGTTTCAGAAGATATAGGAAGACAAATTTTGACATATGGTGAGAGgtatggctca ... ccctactcagGAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGA
ttatactcgaaatgctatattgcctgtagctaaaggatgtcttctccctactcagGAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGATATCACTTCAATTTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCA
agctaaa putative branch site (score: 3)
tgtcttctccctactc putative PPT
tatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttttgtacaaaatgttgcctattgttgcttgcatttgttttatactcgaaatgctatattgcctgtagctaaaggatgtcttctccctactcagGAAACCTGTGGAGGATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGATATCACTTCAATTTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - tgttgcc
- - - - - - - - - - - - - - - - gcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tattgcc