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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcttcactccatattttacttcatgaaacatctatatcgtgcagatattgtgtgtatctattgtttatctaaggggagtagttgtgatttctgcagGATCTATTCACTGTAAAATATTCACCGTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCCACCACCTAGCATGGGTATCTCAATTCAATACAATAATG

Basic information

species Glycine max
transcript GLYMA05G35310.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23728362|gb|BU762232.1|BU762232
EST:     ATCCTTCTACAGTAGACATAAAACCAAGTGGAAGAAGTGAGCTTCCTGAG                         GATCTATTCACTGTAAAATATTCACCGTTCCCTGCTCCAGTCCCAGGTTGG
genomic: ATCCTTCTACAGTAGACATAAAACCAAGTGGAAGAAGTGAGCTTCCTGAGgtattcttca ... atttctgcagGATCTATTCACTGTAAAATATTCACCGTTCCCTGCTCCAGTCCCAGGTTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagatattgtgtgtatctattgtttatctaaggggagtagttgtgatttctgcagGATCTATTCACTGTAAAATATTCACCGTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCCACCACCTAGCATGGGTATCTCAATTCAATACAATAATG
                                              tttctgc  CT-rich tract
             tatctattgtttat  TA-rich tract