1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttcttgagcttttttcctagcaacttgaccttttgtgtaacttcatttcttgccaccagttttaccaatataccaattttaaattataaatattttgtagGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATTTGAAATTTTTTGAG
species | Glycine max |
transcript | GLYMA05G34790.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCTGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAG GAGCATGCCAACCTCTGCTGCCCTGGATGTTGTTGCCAAACATCTGAATTTEST: gi|16349332|gb|BI974927.1|BI974927
genomic: GCCGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAGgtttttaagt ... tattttgtagGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATTT
EST: GCCGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAG GAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATTTEST: gi|27426004|gb|CA937524.1|CA937524
genomic: GCCGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAGgtttttaagt ... tattttgtagGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATTT
EST: GCCGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAG GAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATTTEST: gi|193450026|gb|FK412580.1|FK412580
genomic: GCCGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAGgtttttaagt ... tattttgtagGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATTT
EST: GCCGTTGAGGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAG GAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATTTEST: gi|7684631|gb|AW755279.1|AW755279
genomic: GCCGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAGgtttttaagt ... tattttgtagGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATTT
EST: GCCGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAG GAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATEST: gi|13312878|gb|BG406529.1|BG406529
genomic: GCCGTTGAAGCTATACCATACTTTTCTGCTGGTTTAAAGGGTGTTGCCAGgtttttaagt ... tattttgtagGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAAT
EST: CTTTTCTGCTGGTTTAAAGGGTGTTGCCAG GAGCATGCCAACCTCTG-TGCCCTGGATGTTGTTGCCAAACATCTGAATTT
genomic: CTTTTCTGCTGGTTTAAAGGGTGTTGCCAGgtttttaagt ... tattttgtagGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATTT
tttcttgccaccagttttaccaatataccaattttaaattataaatattttgtagGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATTTGAAATTTTTTGAG
agttttaccaatatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttgagcttttttcctagcaacttgaccttttgtgtaacttcatttcttgccaccagttttaccaatataccaattttaaattataaatattttgtagGAGCATGCCAACCTCTGCTGCCCTGGATGTTGTAGCCAAACATCTGAATTTGAAATTTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - -cctagca
- - - - - - - - - - - - - - ccttttg