Sequence
atgc intronic sequence ATGC exonic sequencegtgagaaaaatgttaattgtactaaattcaacttttactctgaaacattcttaatcttttccccacttttgattcattttagGCATCAGCAAAGAAAGCCAAGGATTTCTTGCCTTTCCTTCACCGAAGTAGAAAAATCCCTGCAGTTGTGGAATATGTCCTTAGTGGCCATCGTTTTAAAT
Basic information
species | Glycine max |
transcript | GLYMA05G33320.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G33320.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 3'ss of exon 11
-------gtgagaaaaatgttaattgtactaaattcaacttttactctga--aacattcttaatcttttccccacttttg-------attcattttagGCATCAGCAAAGAAAGCCAAGGATTTCTTGCCTTTCCTTCACCGAAGTAGAAAAATCCCTGCAGTTGTGGAATATGTCCTTAGTGGCCATCGTTTTAAAT
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gttagaattctgaaatataactcttatgctggattcttttcttgatataattgccaactataaattcactgtctcttttatgaaaatgtctatttcagGCATCAGCAAAGAAAGCAAAAGATTTCTTGCCATTTCTGCAAAGGGTTAGGAGGATGCCTGCCATTGTGGAATATGTCCTCAGTGGTCACCGCTTTAAAC
upper sequence: GLYMA05G33320.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 3'ss of exon 10
gtgagaaaaatgttaat-tgtactaaattcaacttttactct-gaaacattcttaatcttttcccca---cttttgatt-------cattttagGCATCAGCAAAGAAAGCCAAGGATTTCTTGCCTTTCCTTCACCGAAGTAGAAAAATCCCTGCAGTTGTGGAATATGTCCTTAGTGGCCATCGTTTTAAAT
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gttagaaatagaaacttgtatatttatttgagttccttctttcgtgaaagggttaatttgtttttcagtgcttctaatgacttgcatatctcagGCCTCAGCAAAGAAAGCAAAAGATTTCTTGCCATTTTTGCAACGAAGTAGAAGGCTTCCTGCTATTGTGGAATATGTCCTTAGTGGTCATCGGTTCAAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaacttttactctgaaacattcttaatcttttccccacttttgattcattttagGCATCAGCAAAGAAAGCCAAGGATTTCTTGCCTTTCCTTCACCGAAGTAGAAAAATCCCTGCAGTTGTGGAATATGTCCTTAGTGGCCATCGTTTTAAAT
tcttttccccactttt CT-rich tract
ttttgattcatttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagaaaaatgttaattgtactaaattcaacttttactctgaaacattcttaatcttttccccacttttgattcattttagGCATCAGCAAAGAAAGCCAAGGATTTCTTGCCTTTCCTTCACCGAAGTAGAAAAATCCCTGCAGTTGTGGAATATGTCCTTAGTGGCCATCGTTTTAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG