Sequence
atgc intronic sequence ATGC exonic sequencegtgtgaaacttattaaatgatgctttgaatgacaacattttactgtttatttttattgaatgcttcttgttcttcccatttctctttttcatttcttgtcattcagGTGAAGGATAGGCATAATGGAAACCTCCTATTGGATGAAGAAGGTCATATCATTCATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTA
Basic information
species | Glycine max |
transcript | GLYMA05G32460.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G32460.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv04s0044g01210.t01 (Vitis vinifera), 3'ss of exon 11
gtgtgaaacttattaaatgatgctttgaatgacaacattttactgtttatttttattgaatgctt---cttgttcttcccatttctctttttcatttcttgtcattcagGTGAAGGATAGGCATAATGGAAACCTCCTATTGGATGAAGAAGGTCATATCATTCATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTA
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----attagttggtcaatga-gcccggattatctgtagtatata--ccagtttggtgggttggtttaacatatatttgccttttca-tcctcctcttctggtcgct-agGTGAAGGATCGGCACAATGGGAACTTGTTGATGGATGAAGAAGGTCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGA
upper sequence: GLYMA05G32460.1 (Glycine max), 3'ss of exon 11
lower sequence: PP1S113_110V6.1 (Physcomitrella patens), 3'ss of exon 11
---------------------------------------------------------gtgtgaaact--tattaaatgatgctttgaatgacaacattttactgtttatttttattgaatgcttcttgttcttcccatt-tctctttttcatttct---tgtcatt--cagGTGAAGGATAGGCATAATGGAAACCTCCTATTGGATGAAGAAGGTCATATCATTCATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTA
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gtattcatgcacaacttttctatttttttcttttttggagttgatggctattttctggcttttatctactttcaaaagttgaatagaatcaactagtatcactggcatccagcctacaaggccagctaatatttacattgtgtatgaatggattgggaatgtacttggtagGTGAAAGATAGACATAACTCAAATCTGTTGATCGATGAGGATGGTCACATCATTCACATCGACTTTGGTTTTATGCTCTCCAATTCTCCTGGTGGTGTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26057149|gb|CA800063.1|CA800063EST: ACTTTGTTGAAAGTATGGCAGGATATTCCCTGGTGTGCTACTTTCTGCAG GTGAAGGATAGGCATAATGGGAACCTCCTATTGGATGAAGAAGGTCATATC
genomic: ACTTTGTTGAAAGTATGGCAGGATATTCCCTGGTGTGCTACTTTCTGCAGgtgtgaaact ... tgtcattcagGTGAAGGATAGGCATAATGGAAACCTCCTATTGGATGAAGAAGGTCATATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttattgaatgcttcttgttcttcccatttctctttttcatttcttgtcattcagGTGAAGGATAGGCATAATGGAAACCTCCTATTGGATGAAGAAGGTCATATCATTCATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTA
cttcttgttcttccca CT-rich tract
tttttcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtgaaacttattaaatgatgctttgaatgacaacattttactgtttatttttattgaatgcttcttgttcttcccatttctctttttcatttcttgtcattcagGTGAAGGATAGGCATAATGGAAACCTCCTATTGGATGAAGAAGGTCATATCATTCATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG