Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggattttgtatgatgtggctatccttacaaatcaaaatacatactgtgagaaatttccttgataataatactaaatcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGAGGTTTGGACAGTCTCCAGTATTTGTGGCCTCCACACTCTTGGATAATGG

Basic information

species Glycine max
transcript GLYMA05G32100.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32100.1 (Glycine max), 3'ss of exon 11
lower sequence: AT5G09870.1 (Arabidopsis thaliana), 3'ss of exon 10
gttaggattttgtatgatgtggctatccttacaaatcaaaatacatactgtgagaaatttccttgataataatactaaatcttttccagGAACCAACAATGAGAAGA---CATCCAATCTGACTCAAACAAAGTTGGAGAAGAGGTTTGGACAGTCTCCAGTATTTGTGGCCTCCACACTCTTGGATAATGG
    | |    | || |     || |       | |   | | |||  ||    | | ||  |||       | ||   | |||   ||| || ||  ||| |  ||   || |  |   | | |||   ||||||||||||| ||||||||||||||| || ||||| || ||  |     |||| ||   
----gtaaccagaataaatcctctgtatcatttagtttcagttcat--tgctgaacacttttttg------tttctttctttttcttagGCACTAATGATGCGGCGAAATCACCAGAGGCGGCACAATTGAAGTTGGAGAAGAAGTTTGGACAGTCTCCTGTTTTTGTTGCGTCTGCTGGTATGGAGAA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208173047|gb|GD967578.1|GD967578
EST:     AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGCTGGAGAAGA
genomic: AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAGgttaggattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
EST: gi|208224320|gb|GE028029.1|GE028029
EST:     AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
genomic: AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAGgttaggattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
EST: gi|193451358|gb|FK421348.1|FK421348
EST:     AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
genomic: AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAGgttaggattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
EST: gi|208206769|gb|GE002518.1|GE002518
EST:     GCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGTAATGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGCTGGAGAAG
genomic: GCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGG-AATGAAGgttaggattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAG
EST: gi|208193488|gb|GD992905.1|GD992905
EST:     AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGCTGGAGAAGA
genomic: AGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCAGGGAATGAAGgttaggattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaaaatacatactgtgagaaatttccttgataataatactaaatcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGAGGTTTGGACAGTCTCCAGTATTTGTGGCCTCCACACTCTTGGATAATGG
                                      tactaaa  putative branch site (score: 1)
                                             tcttttcc  CT-rich tract
                            ttgataataatactaa  TA-rich tract