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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtttttgtcccttttccctctgttgctcctctcacattttgttatctctgttgttttaagagggagttggggacacggggagggaagtctggtttatggaaaatggtagaatcgtgactgttcggtgttcacatctcaagtatttgcgataatgcttgtttctggtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATGTTCTATTGAACTGTCACTGACTGAGTTGGTGAAGAATTTCGCTAAACGA

Basic information

species Glycine max
transcript GLYMA05G32030.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412403|gb|EV282215.1|EV282215
EST:     GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG                         GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: gi|254341095|gb|GR854823.1|GR854823
EST:     GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG                         GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: gi|151394588|gb|EV264459.1|EV264459
EST:     GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATGCTGTCACAG                         GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: gi|208276227|gb|GE075235.1|GE075235
EST:     GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG                         GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: gi|193395772|gb|FK364831.1|FK364831
EST:     GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTCCACATACTGTCACAG                         GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: gi|21601284|gb|BQ611615.1|BQ611615
EST:     GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG                         GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: gi|151409910|gb|EV279718.1|EV279718
EST:     GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG                         GGCATCTCAATATTGATGTGATTTTGTACTGAAGTC-CCTTTTCAGGAATG
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: gi|192309223|gb|FG999450.1|FG999450
EST:     GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG                         GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
EST: gi|22524861|gb|BU083672.1|BU083672
EST:     GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG                         GGCATCTCAATATTGATGT
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGT
EST: gi|8827475|gb|BE211205.1|BE211205
EST:     GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAG                         GGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG
genomic: GGTCCATAAAGCTGCTTTGAAGGTTTAAGAAGGTTCACATACTGTCACAGgtaaagtttt ... gtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcggtgttcacatctcaagtatttgcgataatgcttgtttctggtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATGTTCTATTGAACTGTCACTGACTGAGTTGGTGAAGAATTTCGCTAAACGA
                  aagtattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaagtttttgtcccttttccctctgttgctcctctcacattttgttatctctgttgttttaagagggagttggggacacggggagggaagtctggtttatggaaaatggtagaatcgtgactgttcggtgttcacatctcaagtatttgcgataatgcttgtttctggtaattgcagGGCATCTCAATATTGATGTGATTTTGTACTGAAGTTGCCTTTTCAGGAATGTTCTATTGAACTGTCACTGACTGAGTTGGTGAAGAATTTCGCTAAACGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA