Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaatgtttactctttattcttttttaaatatccattggttgtttaatgtctgtttatgcactcgttagagtctaacaattaattatgattgtaacattctgggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTTGAG

Basic information

species Glycine max
transcript GLYMA05G30830.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G162881_T01 (Zea mays), 3'ss of exon 4
gttaaatgtttactctttattcttttttaaatatccattggttgtttaatgtctgtttatgcactcgttagagtctaacaattaattatgattgtaacattctgggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTTGAG----------------------------------------------
                                        || |  |  | |||  |  ||  ||| |   |   | |     |      ||| | ||||  ||     | ||||| || ||||||||||| ||||||||||||||||||||||| |||||||| |||                                              
----------------------------------------gtggagtggtatctcctactgttctctt---aacttcatttgaagcctgtattcttacatattgttttctgcagAACGACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGGTATAATCATCATCCATATTACTCTGATGTATTGCATTTTACGTGG

upper sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 11
gttaaatgtttactctttattcttttttaaatatccattggttgtttaatgtctgtttatgcactcgttagagtctaacaattaattatgattgtaacattctgggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTTGAG
             || ||  |   |  |   | | ||||  |  || | | |    | |  | ||| ||   | ||  |  ||| ||||     | || ||       |  |||||||||||||| || || ||||| ||||| ||||| || |||| ||||||||||
-----------gttccttgcttcatcatctgt-ttcattcttcattca-tcttccctaactctctc-ttcttgcctgcc--ttacttatacgctttaccttaaactgttaacagAATGATTTGGTACACGGTTGGGGTCTTGACTTTGCACTCAGAAGATGTGTTGAG

upper sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G24570.1 (Arabidopsis thaliana), 3'ss of exon 10
gttaaatgtttactctttattcttttttaaatatccattggttgtttaatgtctgtttatgcactcgttagagtctaacaattaattatgattgtaacattctgggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTTGAG
                |||  |||  || | |||| ||||| |  || || |||  | ||  | | ||     |||  ||  ||||| |   || | ||        |   |||||||||||||| || || ||||| ||||| ||||| || |||| ||||||||||
---------------gttacacttactttattatctattggctccttcatatct--tcatataat-gtctccttcttgcacctaattgtatatgaacca--------aaaacagAATGATTTGGTTCACGGTTGGGGTCTTGACTTTGCACTGAGAAGATGTGTTGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10256404|gb|BE824170.1|BE824170
EST:     CTCCAGTGTTTTCACGAGATGCATGGCATTGTGTGTGGCATATGATTCAG                         AATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTT
genomic: CTCCAGTGTTTTCACGAGATGCATGGCATTGTGTGTGGCATATGATTCAGgttaaatgtt ... ggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTT
EST: gi|13312427|gb|BG406078.1|BG406078
EST:     ACGAGATGCATGGCATTGTGTGTGGCATATGATTCAG                         AATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTT
genomic: ACGAGATGCATGGCATTGTGTGTGGCATATGATTCAGgttaaatgtt ... ggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTT
EST: gi|7146333|gb|AW508255.1|AW508255
EST:     CTCCAGTGTTTTCACGAGATGCATGGCATTGTGTGTGGCATATGATTCAG                         AATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTT
genomic: CTCCAGTGTTTTCACGAGATGCATGGCATTGTGTGTGGCATATGATTCAGgttaaatgtt ... ggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTT
EST: gi|14009195|gb|BG725799.1|BG725799
EST:     GTTTTCACGAGATGCATGGCATTGTGTGTGGCATATGATTCAG                         AATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTT
genomic: GTTTTCACGAGATGCATGGCATTGTGTGTGGCATATGATTCAGgttaaatgtt ... ggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcactcgttagagtctaacaattaattatgattgtaacattctgggcatttcagAATGATTTGGTCCATGGCTGGGGCCTTGATTTTGCTCTTAGAAAATGTGTTGAG
                                ttgtaac  putative branch site (score: 2)
                taacaattaattatga  TA-rich tract