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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatgctttatctttctattttccatttatccaacttccatttaaatatttgtgttgcagttagcaatagaaattgttacgttggtattgttacagAGATGGGGTGAGTATGTATCCAGCAGACTATCGAGGGAAACATCAATTAGTTGCAACTGACAGAATGAAATTTTGCTTGGATGCTTCTCCAAAACGAAAG

Basic information

species Glycine max
transcript GLYMA05G30770.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024532|gb|CX711273.1|CX711273
EST:     AAGCATCAGGCCACTTTCTGCGTACACAAAAGAGAACTTCAATTCAGATT                         AGATGGGGTGAGTATGTATCCAGCAGACTATCGAGGGAAACATCAATTAGT
genomic: AAGCATCAGGCCACTTTCTGCGTACACAAAAGAGAACTTCAATTCAGATTgtaatcatgc ... attgttacagAGATGGGGTGAGTATGTATCCAGCAGACTATCGAGGGAAACATCAATTAGT
EST: gi|58024320|gb|CX711061.1|CX711061
EST:     AAGCATCAGGCCACTTTCTGCGTACACAAAAGAGAACTTCAATTCAGATT                         AGATGGGGTGAGTATGTATCCAGCAGACTATCGAGGGAAACATCAATTAGT
genomic: AAGCATCAGGCCACTTTCTGCGTACACAAAAGAGAACTTCAATTCAGATTgtaatcatgc ... attgttacagAGATGGGGTGAGTATGTATCCAGCAGACTATCGAGGGAAACATCAATTAGT
EST: gi|58017989|gb|CX704731.1|CX704731
EST:     AAGCATCAGGCCACTTTCTGCGTACACAAAAGAGAACTTCAATTCAGATT                         AGATGGGGTGAGTATGTATCCAGCAGACTATCGAGGGAAACATCAATTAGT
genomic: AAGCATCAGGCCACTTTCTGCGTACACAAAAGAGAACTTCAATTCAGATTgtaatcatgc ... attgttacagAGATGGGGTGAGTATGTATCCAGCAGACTATCGAGGGAAACATCAATTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatatttgtgttgcagttagcaatagaaattgttacgttggtattgttacagAGATGGGGTGAGTATGTATCCAGCAGACTATCGAGGGAAACATCAATTAGTTGCAACTGACAGAATGAAATTTTGCTTGGATGCTTCTCCAAAACGAAAG
                        aatagaaattgtta  TA-rich tract