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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttcttcaatttgatttagattttcaccctgcttatgtgattggatatcttatcgtgtgctgattaagccccacttctttctattgtcctgaattgggttataatttatctttaaatgtgcagGAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAAACATCAAGTGCGATTAAGGTTTTCTGAGTCAGACCTGAGCACTTCCATA

Basic information

species Glycine max
transcript GLYMA05G30210.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30210.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaagtcttcttcaatttgatttagattttcaccctgcttatgtgattggatatcttatcgtgtgctgattaagccccacttctttctattgtcctgaattgggttataatttatctttaaatgt-gcagGAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAAACATCAAGTGCGATTA-AGGTTTTCTGAGTCAGACCTGAGCACTTCCATA
                                         || | |        | |   | | |  | ||     |   |  |  |||||   ||| |     |     |||| |  |||| | ||||||||||| || |  || || |||||| |||| || ||||||||||||||||||||||||||||| || | |   |    |  | |   ||| |     || 
----------------------------------------gtgagctcactctcttcactctcttcaaactag----cgagtggtgttattgatttgactaaaccttcg--ttatgtgaaaattttgcagGAGCTGTTGGCTACCTGGGATCAAATCTGTTTGTAAGGAGGATCTACAGAAACATCAAGTGCGACTAGAAGAGGTAAACGGAAAAAAAGAGAAAACAAAT-

upper sequence: GLYMA05G30210.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 11
-------------------------------------gtaagtcttcttcaatttgatttagattttcaccctgcttatgtgattggatatct--tatcgtgtgctgattaagccccacttctttctattgtcctg----------aattgggttataatttatctttaaatgtgcagGAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAAACATCAAGTGCGATTAAGGTTTTCTGAGTCAGACCTGAGCACTTCCATA------
                                      |   |||   || || |   |     | || ||||   |||     |  ||||||     |    | |  || || |   ||| | |  | | | ||            || ||||| |  | |    || |   |  ||||||||| || ||| | || || ||||||||||| |||||||||||| |||||||||| || || ||  | ||| |    || |   |  || ||  |||      
gtaagtagccattcttagctcaatttttttttaacttctctctctctctctatctctatctctctatctccctatctatccatctatatatctatctccagccgttcttttagacatccttatctgcaattttcttcgggagcattgatggggttttgttattctcttgatactctagGAGCTGTTGGGTTTTTGGGCTCCAATTTGTTCGTAAGGAGGATCTACCGAAACATCAAATGTGACTAGTGATTTGT---CCAAA---GGCCATTTTGATAGGATAA

upper sequence: GLYMA05G30210.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv12s0035g00280.t01 (Vitis vinifera), 3'ss of exon 11
gtaagtcttcttcaatttgatttagattttcaccctgcttatgtgattggatatcttatcgtgtgctgattaagccccacttctttctattgtcctgaattgggttataatttatctttaaatgtgcagGAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAAACATCAAGTGCGATTAAGGTTTTCTGAGTCAGACCTGAGCACTTCCATA-
                  || | | | | ||    | |||||    ||     | || |  |    ||  |       | | ||  || |||   |||  |        ||||||||| |||| | |||||||||| || | ||| || || | ||||||||| |||||||||||||||||||||||||| || || |||   |||    | |  |  |        |  
-----------------agaataaaaatatctttattcttat----ttttgcctttttttatactatgcatttatgttattactcactgttgcattgatgt--------atttatcttcaaatattcagGAGCTGTTGGATATCTGGGCTCCACTTTGTTCGTCAGGAGGATCTACAGAAACATCAAGTGTGACTA-GGTCACCTGGAGGACAAATAGGGCTGATAGTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015855|gb|CX702597.1|CX702597
EST:     TTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTATGTG                         GAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAA
genomic: TTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTATGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAA
EST: gi|17022367|gb|BM093401.1|BM093401
EST:     TTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTATGTG                         GAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAA
genomic: TTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTATGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAA
EST: gi|193664052|gb|FK608716.1|FK608716
EST:     TTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTATGTG                         GAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAA
genomic: TTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTATGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAA
EST: gi|207686685|gb|GD670031.1|GD670031
EST:     TTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAGTTCTATGTG                         GAGCTGTGGGTTTTCTTGGTTCAA
genomic: TTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTATGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTTTCTTGGTTCAA
EST: gi|8669415|gb|BE190522.1|BE190522
EST:     TTTGATGTTTTCTCTTGGACTAGGAATTCTATGTG                         GAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAA
genomic: TTTGATGTTTTCTCTTGGACTAGGAATTCTATGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAA
EST: gi|31311654|gb|CD396857.1|CD396857
EST:     TTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTATGTG                         GAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAA
genomic: TTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTATGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAA
EST: gi|6913951|gb|AW395481.1|AW395481
EST:     TTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTATGTG                         GAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAA
genomic: TTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTATGTGgtaagtcttc ... aaatgtgcagGAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccccacttctttctattgtcctgaattgggttataatttatctttaaatgtgcagGAGCTGTGGGTTTTCTTGGTTCAAATTTGTTCGTGAGGAGGATCTACAGAAACATCAAGTGCGATTAAGGTTTTCTGAGTCAGACCTGAGCACTTCCATA
                              ttataatttatcttta  TA-rich tract