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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttctcagaccaatctatgtgactctagtatagtagcagcaatcaattccaagaactcctcctccttgttcccccatgtcccaacttgctagaatcttctggatttttggagtgtttatcttcattatactcaattataaaacggtggtctgcagAATGTTCCTCCTGCTTTGCTTGTTCGTTTTCTGAGGGAGCATCGTTCAGAGTGGGCTAATTATGAAGTTGATGCATACTCTTCTGCATGTCTCAAAGCTA

Basic information

species Glycine max
transcript GLYMA05G30000.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30000.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os12g41860.1 (Oryza sativa), 3'ss of exon 11
gtacttctcagaccaatctatgtgactctagtatagtagcagcaatcaattccaagaactcctcctccttgttcccccatgtcccaacttgctagaatcttctggatttttggagtgtttatcttcattatactcaattataaaacggtggtctgcagAATGTTCCTCCTGCTTTGCTTGTTCGTTTTCTGAGGGAGCATCGTTCAGAGTGGGCTAATTATGAAGTTGATGCATACTCTTCTGCATGTCTCAAAGCTA
                |  |  |        | |||| ||  ||   ||||  |     ||    || ||||| | |  || || || |||        |||   ||      ||  || | ||| |  | |    ||| |       |    || ||||||| ||||||||| | ||||| || |||||||||||||||||||| || |||||| ||  ||  |||||||| || ||| |||| | | |   ||| |
---------------gttgacataggctctatttagttgct-cagctaattatagattgtctctatctttgtttcactttgaccaaaattg--------ttccaaatc---aaagaattaagctttacaaaatgtcatttt----ttttataatgtagAATGTACCTCCTGCTCTACTTGTGCGATTTCTGAGGGAGCATCGTTCTGAATGGGCTGATCCTGGTGTTGATGCTTATTCTGCTGCTTCTTTGCGAGCCA

upper sequence: GLYMA05G30000.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 11
-------gtacttctcagaccaatctatgtgactctagtatagtagcagca-atcaattccaagaactcctcctcct----tgttcccccatgtc--ccaac-----ttgctagaatcttctggattt---------ttggagtgtttatcttcattatactcaattataaaacggtggtctgcagAATGTTCCTCCTGCTTTGCTTGTTCGTTTTCTGAGGGAGCATCGTTCAGAGTGGGCTAATTATGAAGTTGATGCATACTCTTCTGCATGTCTCAAAGCTA
       | |  ||| |||| |   | |  |        |||||    | |    ||||    ||  |||  || ||    | |  | | ||| |  || ||     ||  | ||||||||||| ||          ||| | | |||    |    |||    | | |  |   |   ||||||||||||||| |||||||| |||||||| || ||||| || || ||||| ||||||||| | ||||  |||||||| || ||| |||||||||| |||||||
gtacatagaaagtct-agacaaccttgtaaggtctattgatagtgaatgtatgctaatttgtggatgtccaacttctgttttatctctcaatgccaccccacaaatattatttgaatcttctgggttaacatcactattgaaatatttgatatatccatatctgactgtttatttg-aatctgcagAATGTTCCCCCTGCTTTACTTGTTCGATTCCTGAGAGAACACCGTTCTGAGTGGGCTGACTATGGTGTTGATGCTTATTCTGCTGCATGTCTTAAAGCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatttttggagtgtttatcttcattatactcaattataaaacggtggtctgcagAATGTTCCTCCTGCTTTGCTTGTTCGTTTTCTGAGGGAGCATCGTTCAGAGTGGGCTAATTATGAAGTTGATGCATACTCTTCTGCATGTCTCAAAGCTA
              tttatcttcattatac  TA-rich tract