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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatttgattttttttttcttttctttttttccctcgtagtcaaaatggtaatatggtgcatgatctgagcccccatttttgcagCATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGGGATAAAGCAGTCTCTTTGGTATTCCGATGCAATCTATTGCTTTGGACTT

Basic information

species Glycine max
transcript GLYMA05G29820.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337327|gb|CO981193.1|CO981193
EST:     CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAG                         CATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
genomic: CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttg ... atttttgcagCATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
EST: gi|120530195|gb|EH258329.1|EH258329
EST:     CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAG                         CATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
genomic: CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttg ... atttttgcagCATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
EST: gi|6848755|gb|AW351045.1|AW351045
EST:     CAAGGACATAAACGGCAATGGAATAGAGNNNGACTTCCAGAAACTTCCAG                         CATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
genomic: CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttg ... atttttgcagCATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
EST: gi|151398365|gb|EV268236.1|EV268236
EST:     CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAG                         CATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
genomic: CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttg ... atttttgcagCATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
EST: gi|16343976|gb|BI969571.1|BI969571
EST:     NAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAG                         CATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG
genomic: CAAGGACATAAACGGCAATGGAATAGAGCCTGACTTCCAGAAACTTCCAGgtacaatttg ... atttttgcagCATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccctcgtagtcaaaatggtaatatggtgcatgatctgagcccccatttttgcagCATGGGATGATATCAGCCGACATCTTAAAAAATGCAGTATGTCACAACAGGGATAAAGCAGTCTCTTTGGTATTCCGATGCAATCTATTGCTTTGGACTT
                                        cccccattttt  CT-rich tract
                   taatat  TA-rich tract