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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtattactaaacattttgttcaaataattgcagtaaatttaaagtttttagctttcctattgacatataggttcttctgtacttgcagTCGGGTCCCAGAGGAATTTGTTCCTCAGCATCCAACTAATGGAAATCCTCCAACTCTGTTTTTAGCATTGAATG

Basic information

species Glycine max
transcript GLYMA05G27900.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G27900.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv01s0010g03300.t01 (Vitis vinifera), 3'ss of exon 11
gtgtattactaaacattttgttcaaataattgcagtaaatttaaagtttttagctttcctattgacatataggttcttctgtacttgcagTCGGGTCCCAGAGGAATTTGTTCCTCAGCATCCAACTAATGGAAATCCTCCAACTCTGTTTTTAGCATTGAATG
  ||  ||| || ||| |||||  | || ||    |||||  | || |||  || ||| | |    | |||  || || |||  |||||||  |||||||||||||||||||| |||||||||||||||||||||||| |||||| | ||||| |  ||  |||
--gtggtaccaagcatcttgttatagtatttatgataaatacagaggttt--gcattc-tgtgagtaaatatcttattgtgtgtttgcagTAAGGTCCCAGAGGAATTTGTTCTTCAGCATCCAACTAATGGAAATCCCCCAACTTTATTTTTGGTTTTACATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatttaaagtttttagctttcctattgacatataggttcttctgtacttgcagTCGGGTCCCAGAGGAATTTGTTCCTCAGCATCCAACTAATGGAAATCCTCCAACTCTGTTTTTAGCATTGAATG
                        tattgac  putative branch site (score: 2)
                                      ttcttctgt  putative PPT
     ttaaagttttta  TA-rich tract