Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcctttatattttttttgttaaattggattcattatattcacttcttttttataaaaccttctatttattaacgttacaattcatgattcagGTCGAAAGGAATGAAAAAGTACACTGCAGTTGACAAATGGAACACACAGCTTAAATCTCTTTATCAAACTATTAACAACAGAGTTTGTTAAAACGTGTAT

Basic information

species Glycine max
transcript GLYMA05G14170.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G14170.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv08s0040g00430.t01 (Vitis vinifera), 3'ss of exon 11
gtctgcctttatattttttttgttaaattggattcattatattcacttcttttttataaaaccttctatttattaacgttacaattcatgattcagGTCGAAAGGAATGAAAAAGTACACTGCAGTTGACAAATGGAACACACAGCTTAAATCTCTTTATCAAACTATTAACAACAGAGTTTGTTAAAACGTGTAT
||     || || ||||||||  |  |||  ||   || |  |    || ||  |||         ||||||     |||   ||  ||  | ||| |||||||||||||| |||||  | ||||| || ||||||||||||||||||||||| |||||||||||||||| |||  ||||  ||| | |  |||||
gttgagtttcatttttttttttattgatt--atctgttgttgttgtatcgttaatat---------tatttaccttggtt--tatctattgtccagATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCTTAAATCCCTTTATCAAACTATTAGCAATCGAGTGGGTTGAGAGTTGTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020463|gb|CX707205.1|CX707205
EST:     ATTCAAGGGCATATTGATCAAGTGAACCGGCTCTTAGAACGCGCTGATAG                         GTCGAAAGGAATGAAAAAGTACACTGCAGTTGACAAATGGAACACACAGCT
genomic: ATTCAAGGGCATATTGATCAAGTGAACCGGCTCTTAGAACGCGCTGATAGgtctgccttt ... catgattcagGTCGAAAGGAATGAAAAAGTACACTGCAGTTGACAAATGGAACACACAGCT
EST: gi|8404263|gb|BE059897.1|BE059897
EST:     ATTCAAGGGCATATTGATCAAGTGAACCGGCTCTTAGAACGCGCTGATAG                         GTCGAAAGGGATGAAAAAGTACACTGCAGTTGACAAATGGGACACACAGCT
genomic: ATTCAAGGGCATATTGATCAAGTGAACCGGCTCTTAGAACGCGCTGATAGgtctgccttt ... catgattcagGTCGAAAGGAATGAAAAAGTACACTGCAGTTGACAAATGGAACACACAGCT
EST: gi|254329996|gb|GR839549.1|GR839549
EST:     ATTCAAGGGCATATTGATCAAGTGAACCGGCTCTTAGAACGCGCTGATAG                         GTCGAAAGGAATGAAAAAGTACACTGCAGTTGACAAATGGAACACACAGCT
genomic: ATTCAAGGGCATATTGATCAAGTGAACCGGCTCTTAGAACGCGCTGATAGgtctgccttt ... catgattcagGTCGAAAGGAATGAAAAAGTACACTGCAGTTGACAAATGGAACACACAGCT
EST: gi|254329997|gb|GR839550.1|GR839550
EST:     ATTCAAGGGCATATTGATCAAGTGAACCGGCTCTTAGAACGCGCTGATAG                         GTCGAAAGGAATGAAAAAGTACACTGCAGTTGACAAATGGAACACACAGCT
genomic: ATTCAAGGGCATATTGATCAAGTGAACCGGCTCTTAGAACGCGCTGATAGgtctgccttt ... catgattcagGTCGAAAGGAATGAAAAAGTACACTGCAGTTGACAAATGGAACACACAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacttcttttttataaaaccttctatttattaacgttacaattcatgattcagGTCGAAAGGAATGAAAAAGTACACTGCAGTTGACAAATGGAACACACAGCTTAAATCTCTTTATCAAACTATTAACAACAGAGTTTGTTAAAACGTGTAT
                             tattaac  putative branch site (score: 1)
     ttcttttttataaaac  TA-rich tract