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...gtagtggttaccctaaccgattcaacttttgtttgagtgcatattatgatgttgtaattagatatgatctcataaatgctgatggttttttggatgacagGTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCCAGTTAATTGTTGTTTCCAA
species | Glycine max |
transcript | GLYMA05G04940.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAG GTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCCEST: gi|192321454|gb|FK011740.1|FK011740
genomic: GGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAGgtaaatgatt ... tggatgacagGTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCC
EST: GGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAG GTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCCEST: gi|192328167|gb|FK022861.1|FK022861
genomic: GGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAGgtaaatgatt ... tggatgacagGTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCC
EST: GGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAG GTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCC
genomic: GGTGGTTGCTTGTGCTCAAAATCTCAGCAAGTTTACCAATCCCGAAGAAGgtaaatgatt ... tggatgacagGTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCC
atgatgttgtaattagatatgatctcataaatgctgatggttttttggatgacagGTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCCAGTTAATTGTTGTTTCCAA
tgctgat putative branch site (score: 3)
tttttt putative PPT
ttgtaattagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtggttaccctaaccgattcaacttttgtttgagtgcatattatgatgttgtaattagatatgatctcataaatgctgatggttttttggatgacagGTTTCCAAGAACTCTCAGTCGATCTAGTTGAGGCAGCTGTTGCTCATTGCCAGTTAATTGTTGTTTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
gtagtgg
- - - - - -cctaacc
- - - - - - - - - - - - - - ttgtttg
- - - - - - - - - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - -gatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat