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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctcagttacccttagctaattattggaacacgatgataaattgttattttaatattaaaccaaatatcttgtttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCTCAACATCTTTTCCGGGTTAGTGTTACTCCGAACGAGTATAATGGCGAGA

Basic information

species Glycine max
transcript GLYMA05G00370.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209698297|gb|BW667575.1|BW667575
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|58021049|gb|CX707791.1|CX707791
EST:     GAAGATCGTTGGATGCTATG-TGGATGATCTAGTTAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: GAAGATCGTTGGATGCTCTGCTG-ATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|58017697|gb|CX704439.1|CX704439
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|9204400|gb|BE330624.1|BE330624
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTATATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|207754087|gb|GD724707.1|GD724707
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|193353568|gb|FK319364.1|FK319364
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTAAGGC
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTG-GGC
EST: gi|58018811|gb|CX705553.1|CX705553
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|51341200|gb|CO982517.1|CO982517
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|58014378|gb|CX701120.1|CX701120
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
EST: gi|51344922|gb|CO985655.1|CO985655
EST:     AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAA                         GAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT
genomic: AGAAGATCGTTGGATGCTCTGCTGATGATCTAGATAATCTTAAATTACAAgtaacctcag ... tttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacacgatgataaattgttattttaatattaaaccaaatatcttgtttatttcagGAAGGAGAAGATAATCCTTATCAGATGACATTGAAGGAAGCTACTTGGGCTCAACATCTTTTCCGGGTTAGTGTTACTCCGAACGAGTATAATGGCGAGA
                    ttttaat  putative branch site (score: 3)
                                        tcttgttt  putative PPT
         ataaattgttatttta  TA-rich tract