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gttagatcgacgcatttcctttgatttcaactgtcctaaaacctacggaacttttttaatgtttcttcaaacattctctgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATGCACTGAATCATCCTTTCTCGTGTTTCTGCTGCTGCTGCAACTCGGAGA
species | Glycine max |
transcript | GLYMA04G40750.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTEST: gi|208190970|gb|GD989630.1|GD989630
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGT
EST: CTCTGAGCTTGTTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATEST: gi|193307091|gb|FK268831.1|FK268831
genomic: CTCTGAGC-TG-TAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG GGTTAGTCCATCAAAAGACACCAEST: gi|18038768|gb|BM307062.1|BM307062
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAA-GACACCA
EST: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATEST: gi|208200891|gb|GD997354.1|GD997354
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: CTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATEST: gi|193726084|gb|FK658964.1|FK658964
genomic: CTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCC-ATEST: gi|58018945|gb|CX705687.1|CX705687
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATEST: gi|58019174|gb|CX705916.1|CX705916
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATEST: gi|151412507|gb|EV282319.1|EV282319
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAG GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATEST: gi|213593557|gb|DB977389.1|DB977389
genomic: ATTGCAGCTCTGAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
EST: GAGCTGTAGCGGTGTGATCTTGGGTTCACAACCTATAAG GGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
genomic: GAGCTGTAGCGGTGTGATCTTGGGTTCACTGCCTATAAGgttagatcga ... tgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCAT
tcctaaaacctacggaacttttttaatgtttcttcaaacattctctgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATGCACTGAATCATCCTTTCTCGTGTTTCTGCTGCTGCTGCAACTCGGAGA
ttctctgct CT-rich tract
aacttttttaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagatcgacgcatttcctttgatttcaactgtcctaaaacctacggaacttttttaatgtttcttcaaacattctctgctaagcagGGTTAGTCCATCAAAGACACCAGTGCGCCCTCGTGCTCCTCGTCCCCCCATGCACTGAATCATCCTTTCTCGTGTTTCTGCTGCTGCTGCAACTCGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC