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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatatgcatttaagttgtttggagaaatatttccaattttttaatatacttacacactattggttatgcaccagTGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCATTCCTTATCTTTCATCAAGCATTGCCAATACATTTTCCTTCAAAATACAA

Basic information

species Glycine max
transcript GLYMA04G37370.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812907|gb|BQ297385.1|BQ297385
EST:     GACGATGATACTCGAAG                         TGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCAT
genomic: GACGATGATACTCGAAGgttatatgca ... tatgcaccagTGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCAT
EST: gi|21887368|gb|BQ740581.1|BQ740581
EST:     GATTCAGCCATGGCCTTAACCCCAAATGATGATGACGATGATACTCGAAG                         TGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCAT
genomic: GATTCAGCCATGGCCTTAACCCCAAATGATGATGACGATGATACTCGAAGgttatatgca ... tatgcaccagTGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCAT
EST: gi|51341763|gb|CO983080.1|CO983080
EST:     AAATGATGATGACGATGATACTCGAAG                         TGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCAT
genomic: AAATGATGATGACGATGATACTCGAAGgttatatgca ... tatgcaccagTGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCAT
EST: gi|11413123|gb|BF425134.1|BF425134
EST:     GATTCAGCCATGGCCTTAACCCCAAATGATGATGACGATGATACTCGAAG                         TGAGGGTTCGTTGAAAGTGGCTTCT
genomic: GATTCAGCCATGGCCTTAACCCCAAATGATGATGACGATGATACTCGAAGgttatatgca ... tatgcaccagTGAGGGTTCGTTGAAAGTGGCTTCT
EST: gi|33390686|gb|CA853881.1|CA853881
EST:     GATTCAGCCATGGCCTTAACCCCAAATGATGATGACGATGATACTCGAAG                         TGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCAT
genomic: GATTCAGCCATGGCCTTAACCCCAAATGATGATGACGATGATACTCGAAGgttatatgca ... tatgcaccagTGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCAT
EST: gi|5678159|gb|AI939289.1|AI939289
EST:     GACGATGATACTCGAAG                         TGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCAT
genomic: GACGATGATACTCGAAGgttatatgca ... tatgcaccagTGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggagaaatatttccaattttttaatatacttacacactattggttatgcaccagTGAGGGTTCGTTGAAAGTGGCTTCTGAGGGAGGAGAAACAGGGAGATCCATTCCTTATCTTTCATCAAGCATTGCCAATACATTTTCCTTCAAAATACAA
                           tacttac  putative branch site (score: 1)
     aaatatttccaatttt  TA-rich tract