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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatagataatctttatattccacttttcttttctttctgaactattttcattattaagactgtattccagGTATCTGTCAAGAAGCAGAGAAGTGCATTTCCTCCAAACTTTGTACATTCATTGGATAGTTCACACATGATGATGACTGCTCTAGCTTGCAATGACGCTG

Basic information

species Glycine max
transcript GLYMA04G24350.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G24350.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os06g44230.1 (Oryza sativa), 3'ss of exon 16
gtaagtatagataatctttatattccacttttcttttctttctgaactattttcattattaagactgta-----ttccagGTATCTGTCAAGAAGCAGAGAAGTGCATTTCCTCCAAACTTTGTACATTCATTGGATAGTTCACACATGATGATGACTGCTCTAGCTTGCAATGACGCTG
||||||| |   ||| | |  |||    ||| | ||  ||  |  | || |   |||| ||   ||||      |||||| |  |  || ||  ||| |     || ||||| ||||| ||||| || ||  | ||||||||||||||||||||||||||| | || |||||  | ||||
gtaagtaaaaccaatttctggattgatttttccgttctttctttcattactgcgattaatatcgctgtcacaatttccagATTGCACTCCAGCGGCAAAAGGCAGCTTTTCCCCCAAATTTTGTGCACTCTCTTGATAGTTCACACATGATGATGACTGCTATTGCATGCAAAAAGGCTG

upper sequence: GLYMA04G24350.1 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G115564_T02 (Zea mays), 3'ss of exon 16
gtaagtatagataat-ctttatattccact-tttcttttctttctgaactattttcattattaagactgtattccagGTATCTGTCAAGAAGCAGAGAAGTGCATTTCCTCCAAACTTTGTACATTCATTGGATAGTTCACACATGATGATGACTGCTCTAGCTTGCAATGACGCTG
|| |||  || || | |   |  ||   || |||||||||    |    ||  |   | ||| | |   | || ||| |  |  || | | ||| |     || ||||| ||||| ||||| || ||| ||||||||||||| ||||||||||| ||  | |||||||| ||  |||
gtgagttcagctatttcaaaacgttttcctgtttcttttcccattcttgtagctaattaattgacataat-tttcagATTGCAATCCAAAGGCAAAAGGCAGCTTTTCCACCAAATTTTGTGCACTCACTGGATAGTTCACATATGATGATGACAGCGATTGCTTGCAAGGAGTCTG

upper sequence: GLYMA04G24350.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv11s0037g00630.t01 (Vitis vinifera), 3'ss of exon 16
gtaagtatagataatc--tttatattccacttttcttttctttctgaact-------------attttcattattaagactgtattccagGTATCTGTCAAGAAGCAGAGAAGTGCATTTCCTCCAAACTTTGTACATTCATTGGATAGTTCACACATGATGATGACTGCTCTAGCTTGCAATGACGCTG
|| ||  ||  |  |    ||| ||||  ||| | | || ||     |||             | |||   | | |       | |||||||     | | ||| ||||||| ||||||||| ||||| ||||| || ||| | ||| ||||||||||||||||||| ||| | || ||||  || ||||
gtgagcttacgtctttgtcttagattcagcttgtgtctttttctaacacttgcagttacctagaatttttctttcatatgccaactccagGTTGTGATTAGGAAACAGAGAACTGCATTTCCACCAAATTTTGTTCACTCACTTGATGGTTCACACATGATGATGACCGCTGTTGCCTGCAGGGATGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattccacttttcttttctttctgaactattttcattattaagactgtattccagGTATCTGTCAAGAAGCAGAGAAGTGCATTTCCTCCAAACTTTGTACATTCATTGGATAGTTCACACATGATGATGACTGCTCTAGCTTGCAATGACGCTG
                        aactattttcattatt  TA-rich tract