1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaacaccacctatctttcacaaaaatcaaatatagcttacacatttagtaacaatatcattttttgtttccttattgaatgatacagGCATCTGACTCAACTTACAAGAAGAGGGGGAAGTCCCTTGAATTTTAAGTTTGTGGAACATCATAAG
species | Glycine max |
transcript | GLYMA04G14280.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TTCCTTCATCTTATATTAATTAGAGACTGTCCTCATGTATCTTATTTATG GCATCTGACTCAACTTACAAGAAGAGGGGGAAGTCCCTTGAATTTTAAGTTEST: gi|22933202|gb|BU550341.1|BU550341
genomic: TTCCTTCATCTTATATTAATTAGAGACTGTCCTCATGTATCTTATTTATGgtaaacacca ... aatgatacagGCATCTGACTCAACTTACAAGAAGAGGGGGAAGTCCCTTGAATTTTAAGTT
EST: TTCCTTCATCTTATATTAATTAGAGACTGTCCTCATGTATCTTATTTATG GCATCTGACTCAACTTACAAGAAGAGGGGGAAGTCCCTTGAATTTTAAGTTEST: gi|11413911|gb|BF425922.1|BF425922
genomic: TTCCTTCATCTTATATTAATTAGAGACTGTCCTCATGTATCTTATTTATGgtaaacacca ... aatgatacagGCATCTGACTCAACTTACAAGAAGAGGGGGAAGTCCCTTGAATTTTAAGTT
EST: TTCCTTCATCTTATATTAATTAGAGACTGTCCTCATGTATCTTATTTATG GCATCTGACTCAACTTACA
genomic: TTCCTTCATCTTATATTAATTAGAGACTGTCCTCATGTATCTTATTTATGgtaaacacca ... aatgatacagGCATCTGACTCAACTTACA
tagcttacacatttagtaacaatatcattttttgtttccttattgaatgatacagGCATCTGACTCAACTTACAAGAAGAGGGGGAAGTCCCTTGAATTTTAAGTTTGTGGAACATCATAAG
tagtaac putative branch site (score: 1)
atttagtaacaatatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacaccacctatctttcacaaaaatcaaatatagcttacacatttagtaacaatatcattttttgtttccttattgaatgatacagGCATCTGACTCAACTTACAAGAAGAGGGGGAAGTCCCTTGAATTTTAAGTTTGTGGAACATCATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG