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...catttttagccgaacgttgaccattttccatatattttgtagtaaacgtaataaaaaagagtctctgcttcaaggctaactgtctttgaattgtgtacagTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAACCTCATATGGTGATTGTTGTGATACAAAATTTATT
species | Glycine max |
transcript | GLYMA04G12490.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAAT TTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGEST: gi|214007553|gb|DB986668.1|DB986668
genomic: CTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATgtgagtcata ... ttgtgtacagTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAG
EST: CTCCATATGCTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAAT TTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGEST: gi|15202337|gb|BI425348.1|BI425348
genomic: CTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATgtgagtcata ... ttgtgtacagTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAG
EST: CTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAAT TTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGEST: gi|192303927|gb|FG993827.1|FG993827
genomic: CTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATgtgagtcata ... ttgtgtacagTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAG
EST: CTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAAT TTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGEST: gi|22522293|gb|BU081113.1|BU081113
genomic: CTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATgtgagtcata ... ttgtgtacagTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAG
EST: CTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAAT TTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGEST: gi|15204610|gb|BI427378.1|BI427378
genomic: CTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATgtgagtcata ... ttgtgtacagTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAG
EST: CTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAAT TTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTC
genomic: CTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATgtgagtcata ... ttgtgtacagTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTC
acgtaataaaaaagagtctctgcttcaaggctaactgtctttgaattgtgtacagTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAACCTCATATGGTGATTGTTGTGATACAAAATTTATT
ggctaac putative branch site (score: 2)
ataaaaaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttttagccgaacgttgaccattttccatatattttgtagtaaacgtaataaaaaagagtctctgcttcaaggctaactgtctttgaattgtgtacagTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAACCTCATATGGTGATTGTTGTGATACAAAATTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtctttg