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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaaattcttagtcctgtttctgtcttttgtttgcaagtatgaaattttcttcttccttttttctcttcctcttttggtgacgattttcaatttttggtttcaagGATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTGATGGCTGAGTTCCCATCAGCCAAACCTCCCCTTGGTGTTTTTTTTGCTG

Basic information

species Glycine max
transcript GLYMA04G10200.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G10200.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 11
----------------------------------------------------------------------gtaacaaaattcttagtcctgtttctgtcttttgtttgcaa-gtatgaaattttcttcttccttttttctcttcctcttttggtgacgattttcaatttttggt-ttcaagGATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTGATGGCTGAGTTCCCATCAGCCAAACCTCCCCTTGGTGTTTTTTTTGCTG
                                                                       |  ||   |   |    || | ||| ||| |     |  | |  || | | ||  | || |   ||| |       |||   |   | | ||   ||| |  | ||| |||||||||||||  ||||||| |||||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||| ||||| |
gtcaacaaacaactgatgtttttatcttcctctcctcttccccctcaacatccaaattcctgtttcctttttttcattctctctctctctctctctctctctctcgggggatggttgtagtgttggtgttgcaggttttttgctgaatttatttattggtcttatgtttcttatattccagGATGAGTACTCACAATGGGTTGTTGGAAGTCAGAGGAGTCTCCTTGAGGTAATGGCTGAGTTCCCTTCAGCGAAACCTCCCCTCGGTGTTTTCTTTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13251742|gb|BG362645.1|BG362645
EST:     AACTTAGTGAAGCAGAAAGATTAAAGTTCCTTTCATCTCCTCAGGGAAAG                         GATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTG
genomic: AACTTAGTGAAGCAGAAAGATTAAAGTTCCTTTCATCTCCTCAGGGAAAGgtaacaaaat ... tggtttcaagGATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttccttttttctcttcctcttttggtgacgattttcaatttttggtttcaagGATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTGATGGCTGAGTTCCCATCAGCCAAACCTCCCCTTGGTGTTTTTTTTGCTG
                                         ttttt  CT-rich tract
                                 attttcaattttt  TA-rich tract