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gtaagtctattagctagcatatagtttgattgtattgtttttgaaattggttgtttaagtaaggattttgattttctgttttctgttatattgttggtctcttatagtgatatgatatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAAGTTGGAACAACAGCAAACAAAGCAGCTGGTGACAACTCAGGTCATTCCGGGA
species | Glycine max |
transcript | GLYMA04G09000.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACA GATGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAAGTTEST: gi|19452311|gb|BM953721.1|BM953721
genomic: CGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACAgtaagtctat ... tatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAAGTT
EST: CGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACA GATGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAAGTTEST: gi|19934805|gb|BQ079835.1|BQ079835
genomic: CGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACAgtaagtctat ... tatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAAGTT
EST: CGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACA AATGCTGCTAGTCCA
genomic: CGCCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACAgtaagtctat ... tatgatgcagGATGCTGCTAGTCCA
attttctgttttctgttatattgttggtctcttatagtgatatgatatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAAGTTGGAACAACAGCAAACAAAGCAGCTGGTGACAACTCAGGTCATTCCGGGA
ttttgat putative branch site (score: 4)
ttttctgttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctattagctagcatatagtttgattgtattgtttttgaaattggttgtttaagtaaggattttgattttctgttttctgttatattgttggtctcttatagtgatatgatatgatgcagGATGCTGCTAGTCCAAACCGTACACTTGATCTGGCTTCTGCACTTGAAGTTGGAACAACAGCAAACAAAGCAGCTGGTGACAACTCAGGTCATTCCGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG