1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gttaagatttgaagatggttaggatttatgactaccatgcatgcttccaaaatgtggtttagctagttctgacatcttttcttacttgctatcaacgcagTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCTGACGACAAGTCTAGCAAAAAGGTTGAATAAGTTGAAGCATGCCCAATAC
species | Glycine max |
transcript | GLYMA04G08510.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAG TTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCTEST: gi|6915891|gb|AW397421.1|AW397421
genomic: TAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGgtttgttttc ... atcaacgcagTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCT
EST: TAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAG TTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCTEST: gi|193623129|gb|FK577727.1|FK577727
genomic: TAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGgtttgttttc ... atcaacgcagTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCT
EST: TATGGAATGGTGATGTCAAACAG TTGTTGGAGTTCGGTGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCTEST: gi|120494250|gb|EH222417.1|EH222417
genomic: TATGGAATGGTGATGTCAAACAGgtttgttttc ... atcaacgcagTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCT
EST: TAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAG TTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCTEST: gi|192327708|gb|FK020699.1|FK020699
genomic: TAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGgtttgttttc ... atcaacgcagTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCT
EST: TAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAG TTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCTEST: gi|14011195|gb|BG726048.1|BG726048
genomic: TAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGgtttgttttc ... atcaacgcagTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCT
EST: TAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAG TTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCT
genomic: TAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGgtttgttttc ... atcaacgcagTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCT
tccaaaatgtggtttagctagttctgacatcttttcttacttgctatcaacgcagTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCTGACGACAAGTCTAGCAAAAAGGTTGAATAAGTTGAAGCATGCCCAATAC
ttcttac putative branch site (score: 2)
ttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaagatttgaagatggttaggatttatgactaccatgcatgcttccaaaatgtggtttagctagttctgacatcttttcttacttgctatcaacgcagTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCTGACGACAAGTCTAGCAAAAAGGTTGAATAAGTTGAAGCATGCCCAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - -gatggtt
- - - - - - - - - - - - - - - - - ccatgca
- - - - - - - - - - - - - - - - - - - - -tgcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgac