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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggtttttctgtgtgttttaattgatggaaggaatcatgaagttccttgcatgtagactcattgccattccattttggcagtgggatgataaggatcttgaattgcagGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTCGAGTCTTTTTTGTCCCATGATGACACAGACCCTAGAGATACTGTTGGCCGTT

Basic information

species Glycine max
transcript GLYMA04G07460.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07460.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 12
gtgagtggtttttctgtgtgttttaattgatggaaggaatcatgaagttccttgcatgtagactcattgccattccattttggcagtgggatgataaggatcttgaattgcagGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTCGAGTCTTTTTTGTCCCATGATGACACAGACCCTAGAGATACTGTTGGCCGTT
|||||     | | |   |  ||  | | |  ||||| ||  |  | || || ||||| |  |||||||  |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||| || || || || ||||| ||||||||||| ||||||||||| |                           
gtgagcaaagtcttttccttcttgtacttacagaagggattttttatttactcgcatgaattctcattggtattccattttggcagTGGGATGATAAAGATCTTGAATTGCAGGCTGATATGGATCGTTTTGTGGAAGATGGTTCCCTTGACGATAATGTTGAGTCTTTTTTATCCCATGATGATA---------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagactcattgccattccattttggcagtgggatgataaggatcttgaattgcagGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTCGAGTCTTTTTTGTCCCATGATGACACAGACCCTAGAGATACTGTTGGCCGTT
                                atgataa  TA-rich tract