1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gacctgtatctaagttgatttttgttgcttaacagtgcaacttgatttgaattgtttgatgcaattttctccggaataattaaattgaatttcaatacagGAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGATGTGGGTAGCACTGTCTATCTTCTTCTTGACTGTATTAACTCTCTTACG
species | Glycine max |
transcript | GLYMA04G01220.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGCTGG-TGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAG GAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGAEST: gi|298191514|gb|HO038993.1|HO038993
genomic: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGA
EST: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAG GAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGAEST: gi|16348272|gb|BI973867.1|BI973867
genomic: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGA
EST: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAG GAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGA
genomic: TGCTGGTTGGAAGAAGCAAGCATCTCTACAGAGGTCTTACACCTCTAAAGgttagtgact ... ttcaatacagGAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGA
tttgaattgtttgatgcaattttctccggaataattaaattgaatttcaatacagGAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGATGTGGGTAGCACTGTCTATCTTCTTCTTGACTGTATTAACTCTCTTACG
gtttgat putative branch site (score: 5)
aataattaaattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacctgtatctaagttgatttttgttgcttaacagtgcaacttgatttgaattgtttgatgcaattttctccggaataattaaattgaatttcaatacagGAGCACCTCCTCCTGACACTCAGAAAACTCCTGAAGGGATTCAAGCTCGGATGTGGGTAGCACTGTCTATCTTCTTCTTGACTGTATTAACTCTCTTACG
-acctgta
- - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - -tgcaact
- - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgca