Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttataccatttgcaaaagaagttatgaaaccattaaacatatgtaattccatggagcaattgtgttttaactaatgtaaaggaatattctgtttctctagGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTG

Basic information

species Glycine max
transcript GLYMA03G40000.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40000.2 (Glycine max), 3'ss of exon 11
lower sequence: GRMZM2G108416_T01 (Zea mays), 3'ss of exon 11
------------ttataccatttgcaaaagaagttatgaaaccattaaacatatgtaattccatggag---caattgtgttttaactaatgtaaaggaata--ttctgtttctc-----tagGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTG
            | |       |   || |    ||| | |  || | |  |||  |  | |||   |     || |    ||  || ||  ||   | |   |    ||| ||      ||||  | ||||| |||||||||||||||||||||||||||||| | || ||||
gtaaaatatagatcaagattcatcacaatgtcactattataatatgatatctat-caccttcataacgaccttatcgctcattgcctcattcaattcattggctgtgatttatcaagtgaagGTGACATCTGGAATGAGTCCAGCTTTCAATCTTTATGGGTGTGCCTTGATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205448|gb|BU964701.1|BU964701
EST:     GCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAG                         GTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATT
genomic: GCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGgtttttctct ... gtttctctagGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATT
EST: gi|17021927|gb|BM092961.1|BM092961
EST:     GCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAG                         GTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATT
genomic: GCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGgtttttctct ... gtttctctagGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATT
EST: gi|6724770|gb|AW309169.1|AW309169
EST:     GCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAG                         GTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATT
genomic: GCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGgtttttctct ... gtttctctagGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccatggagcaattgtgttttaactaatgtaaaggaatattctgtttctctagGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTG
                       aactaat  putative branch site (score: 2)
                                       tattctgtttctct  putative PPT
                   ttttaactaatgtaaa  TA-rich tract