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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacatttgacttcttagcaggcctttctaactctaatttcaatccacctaatttgcaaaatggagctgtactgtactgctcatgtaatgattgtttctccgcctttgaagctttatataatgtgttttttactttatcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTC

Basic information

species Glycine max
transcript GLYMA03G38850.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38850.2 (Glycine max), 3'ss of exon 11
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 11
gtgagtacatttgacttcttagcaggcctttctaactctaatttcaatccacctaatttgcaaaatggagctgtactgtactgctcatgtaatgattgtttctccgcctttgaagctttatataatgtgttttttactttatcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTC
                                   |    || | |      || |||| |   ||  | |  |  | |||| |       ||| || | | |     || |  || | | ||||| |||||  |       |   ||||| | ||| ||||||||||| | ||||| ||||| || |||||| ||| ||| ||| |||||||||| || || ||||||||| | ||||| |||||  |||
----------------------------------tcatcgatcttag---gtctcatttacttgatccatcatttttctactcc-------atgcttctctttttcgtttaggtgcatca-ataatttgtttact------cccaatgcagATGGATGCCTTGACCCATTCCTTCTTCGATGAGCTACGTGACTCAAGCACCCGCCTGCCAAATGGCCGATTTCTTCCACCACTATTCAACTTTAAGCCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296807|gb|FG993105.1|FG993105
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT                         TTAGATACCTTGACCCATCCNNNNNNNGATGAACTTCGTGACCCAAGCACT
genomic: ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacat ... tcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
EST: gi|15285595|gb|BI469486.1|BI469486
EST:     ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT                         TTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
genomic: ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacat ... tcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
EST: gi|21888144|gb|BQ741366.1|BQ741366
EST:     ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT                         TTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
genomic: ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacat ... tcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
EST: gi|19054267|gb|BM732934.1|BM732934
EST:     ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT                         TTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
genomic: ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacat ... tcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
EST: gi|22931093|gb|BU548232.1|BU548232
EST:     ATCTGGTATCAAGACTACTACAATACTCCCCTAANNNGCGGTGCACTGCT                         TTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
genomic: ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacat ... tcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
EST: gi|21994002|gb|BQ785530.1|BQ785530
EST:     ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCT                         TTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT
genomic: ATCTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACTGCTgtgagtacat ... tcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttctccgcctttgaagctttatataatgtgttttttactttatcttgtgcagTTAGATACCTTGACCCATCCTTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTC
                                 ttttttactttatctt  CT-rich tract
                    tttatataatgtgttt  TA-rich tract