1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...catagcatcaaatcattgtagagtagatatgtttgtgtattcctcttgtatttatctaatggaacaaggtgctgtgtgtatgctttatttctttaaacagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTACTTGAGAAGTTGAGATATACAGATCGTGCATATTACCAGTTGTGCCACC
species | Glycine max |
transcript | GLYMA03G38830.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAG ACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTAEST: gi|16347425|gb|BI973020.1|BI973020
genomic: ATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAGgtattgtata ... ctttaaacagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTA
EST: ATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAG ACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTAEST: gi|16105691|gb|BI893431.1|BI893431
genomic: ATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAGgtattgtata ... ctttaaacagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTA
EST: ATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAG ACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTAEST: gi|11412398|gb|BF424409.1|BF424409
genomic: ATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAGgtattgtata ... ctttaaacagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTA
EST: ATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAG ACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAAGGTEST: gi|15001174|gb|BI321988.1|BI321988
genomic: ATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAGgtattgtata ... ctttaaacagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTG-AAGGT
EST: ATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAG ACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTAEST: gi|7588638|gb|AW704429.1|AW704429
genomic: ATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAGgtattgtata ... ctttaaacagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTA
EST: ATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAG ACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTA
genomic: ATATAGCCAAGAATTTACTTGGGGCAGACTTTGCAGCAGAACTATCAAAGgtattgtata ... ctttaaacagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTA
ttgtatttatctaatggaacaaggtgctgtgtgtatgctttatttctttaaacagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTACTTGAGAAGTTGAGATATACAGATCGTGCATATTACCAGTTGTGCCACC
atctaat putative branch site (score: 3)
tgctttatttcttt putative PPT
tttatttctttaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catagcatcaaatcattgtagagtagatatgtttgtgtattcctcttgtatttatctaatggaacaaggtgctgtgtgtatgctttatttctttaaacagACTACTCTCAGTGAGCATGATAATGAAATGTCAAGGAGGCTGGTGAAGGTACTTGAGAAGTTGAGATATACAGATCGTGCATATTACCAGTTGTGCCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT