1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtgtgtttcaaagtgacgttaatgccttgggcgaaattattcactatttattgctctcagaaaagagtaatctgataagctgatatatcttatcctgcagCCAGTTGCAATTGCTGTTGGAGACTGGTTTTTGGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACCTGCCATAATCTGGTCT
species | Glycine max |
transcript | GLYMA03G38430.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGAGACAAGATACATGGTTTGCTGATGACTCTCCACTCATTAACAACGTG CCAGTTGCAATTGCTGTTGGAGACTGGTTTTTGGATCGGAAAACTGTCAAAEST: gi|193359655|gb|FK323739.1|FK323739
genomic: AGAGACAAGATACATGGTTTGCTGATGACTCTCCACTCATTAACAACGTGgtatgcatga ... tatcctgcagCCAGTTGCAATTGCTGTTGGAGACTGGTTTTTGGATCGGAAAACTGTCAAA
EST: AGAGACAAGATACATGGTTTGCTGATGACTCTCCACTCATTAACAACGTG CCAGTTGCAATTGEST: gi|7285069|gb|AW597556.1|AW597556
genomic: AGAGACAAGATACATGGTTTGCTGATGACTCTCCACTCATTAACAACGTGgtatgcatga ... tatcctgcagCCAGTTGCAATTG
EST: AGAGACAAGATACATGGTTTGCTGATGACTCTCCACTCATTAACAACGTG CCAGTTGCAATTGCTGTTGGAGACTGGTTTTTGGATCGGAAAACTGTCAAA
genomic: AGAGACAAGATACATGGTTTGCTGATGACTCTCCACTCATTAACAACGTGgtatgcatga ... tatcctgcagCCAGTTGCAATTGCTGTTGGAGACTGGTTTTTGGATCGGAAAACTGTCAAA
atttattgctctcagaaaagagtaatctgataagctgatatatcttatcctgcagCCAGTTGCAATTGCTGTTGGAGACTGGTTTTTGGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACCTGCCATAATCTGGTCT
agctgat putative branch site (score: 4)
tcttatcct putative PPT
atatatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtttcaaagtgacgttaatgccttgggcgaaattattcactatttattgctctcagaaaagagtaatctgataagctgatatatcttatcctgcagCCAGTTGCAATTGCTGTTGGAGACTGGTTTTTGGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACCTGCCATAATCTGGTCT
gtgtgtt
- - - - - - - - - - aatgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgata