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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattaacccacatcccctgctttcgtttatttttgttaacgattttattttgttttgattcgtaaataatcgatttctctcatgttcaagcagTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAACAGCCTTTCTTCAGCGTTACTTCTTTGTCTTCACACAATTATTCTCTGG

Basic information

species Glycine max
transcript GLYMA03G37130.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37130.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os01g07720.4 (Oryza sativa), 3'ss of exon 12
-------------gtagattaacccacatcccctgct-ttcgtttatttttgttaacgattttattttgttttgattcgtaaa-taatcgatttctctcatgttcaagcagTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAACAGCCTTTCTTCAGCGTTACTTCTTTGTCTTCACACAATTATTCTCTGG
              | |  |   ||   ||| || |  || |  ||||       |   |   |      || ||||  |    | ||        |   |||||   |||  | ||||| ||  | |  |||||||| |||||||||||||||||||| |    |  ||| |||  | |  | || |   ||||||     ||  | |  
gtaacacgctactattgcatggtccttttccacttcagttggcatattcagaaccattttggcaaaccacttggatttattctcttatatcaccgccctttgttctctcagGGTCATTTTATTTCTTGCTGTGGAGCTCTGCTGGAATATCTATCCTTCCACTGCCTATTCGTCACTGCTGTTGCTATTCATTCACATCTCCATCTTGTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204166|gb|BI426934.1|BI426934
EST:     TATAGCTTGCCCTACTTGTTGTGGAGAACGAATTACCCTACATTGCTGCG                         TTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAA
genomic: TATAGCTTGCCCTACTTGTTGTGGAGAACGAATTACCCTACATTGCTGCGgtagattaac ... gttcaagcagTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAA
EST: gi|10236259|gb|BE805147.1|BE805147
EST:     TATAGCTTGCCCTACTTGTTGTGGAGAACGAATTACCCTACATTGCTGCG                         TTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAA
genomic: TATAGCTTGCCCTACTTGTTGTGGAGAACGAATTACCCTACATTGCTGCGgtagattaac ... gttcaagcagTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAA
EST: gi|7589004|gb|AW704787.1|AW704787
EST:     ACGAATTACCCTACATTGCTGCG                         TTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAA
genomic: ACGAATTACCCTACATTGCTGCGgtagattaac ... gttcaagcagTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgattttattttgttttgattcgtaaataatcgatttctctcatgttcaagcagTTTGATTTTGTTCGTGGGAGTGGAGCTGTGCTGGAATATCTATCCTTCGAACAGCCTTTCTTCAGCGTTACTTCTTTGTCTTCACACAATTATTCTCTGG
                                   tttctctcatgttc  CT-rich tract
     tttattttgttttgat  TA-rich tract