Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggttatactttgtacgatattattcattttattatttttgccaatatctctatttctttcctttcaaccttgtcctcttattatttcatgaatgatattatttataagattttatccatggtattttaagtttctgcttagacctgattaccaatatcttatgaatgtagCCATGCATCAAATAATACATTGGATGGGCTGAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGGTCACGAGGTTATCATTGGATGTGGGAT

Basic information

species Glycine max
transcript GLYMA03G35020.2
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G35020.1 (Glycine max), 3'ss of exon 11
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaatggttatactttgtacgatattattcattttattatttttgccaatatctctatttctttcctttcaaccttgtcctcttattatttcatgaatgatattatttataagattttatccatggtattttaagtttctgcttagacctgattaccaatatcttatgaatgtagCCATGCATCAAATAATACATTGGATGGGCTGAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGGTCACGAGGTTATCATTGGATGTGGGAT
                                                                            ||  |     | || |||||| |  |  |   || ||||        ||||  ||||    ||   ||  | ||   | | | | ||| |    || |||||||| ||||| || ||||||||||| ||||||||||||||||||||||||| ||| || || ||  ||||  | || || || |||||||||||||||
----------------------------------------------------------------------------gtagtgaaggt-ttacatgaaagcaaaca---atgagatccaccttttggtcatttacaagtc--attgaatct---tccgactctctaacctgtgcagCCATGCTTCAAAAAACACATTGGATGGACTGAACATGTTTGATGGAACTGATGCTCACTATTTTCACTCTGGACCTCGGGGATACCATTGGATGTGGGAT

upper sequence: GLYMA03G35020.1 (Glycine max), 3'ss of exon 11
lower sequence: AT2G36390.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaatggttatactttgtacgatattattcattttattatttttgccaatatctctatttctttcctttcaaccttgtcctcttattatttcatgaatgatattatttataagattttatccatggtattttaagtttctgcttagacctgattaccaatatctt---atgaatgtagCCATGCATCAAATAATACATTGGATGGGCTGAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGGTCACGAGGTTATCATTGGATGTGGGAT
                                                                                | ||    | || | || |  | | | |  || ||| |      | |  | |    || | | | ||  | || | || | ||||   || ||   |||||||||||||| || ||| ||||||| ||| ||||||||||||| ||||||||||| || |||||  |||| || || |||||||||||||||||||||
-------------------------------------------------------------------------------gtattggcttctctttaacg-cact-tctccaatattgtgaattagttgatatggactttttcatgga--taatcatcattgtctttaaataaaaccagCCATGCATCAAAAAACACACTGGATGGCCTGGACATGTTTGATGGTACTGATGGTCAATATTTCCACTCTGGATCGCGTGGTTATCATTGGATGTGGGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatggtattttaagtttctgcttagacctgattaccaatatcttatgaatgtagCCATGCATCAAATAATACATTGGATGGGCTGAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGGTCACGAGGTTATCATTGGATGTGGGAT
                          acctgat  putative branch site (score: 4)
      tattttaagtttct  TA-rich tract