1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...taacagtttttctagttttacacctctggtaatatagctcaattgtgtggagatggtcttgtcttgttcctcaaatcattctgtcttgtttggtcattagGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAG
species | Glycine max |
transcript | GLYMA03G32410.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTG GCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAGEST: gi|11275016|gb|BF325340.1|BF325340
genomic: CACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTGgtatgttcca ... tggtcattagGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAG
EST: CACAACCATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTG GCCACTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAGEST: gi|9902862|gb|BE611830.1|BE611830
genomic: CACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTGgtatgttcca ... tggtcattagGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAG
EST: GTTTGCTCAATATTCTCGATTTGTATATTTG GCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAGEST: gi|151398619|gb|EV268490.1|EV268490
genomic: GTTTGCTCAATATTCTCGATTTGTATATTTGgtatgttcca ... tggtcattagGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAG
EST: CACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTG GCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAGEST: gi|17153380|gb|BM143313.1|BM143313
genomic: CACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTGgtatgttcca ... tggtcattagGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAG
EST: CAATATTCTCGATTTGTATATTTG GCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAGEST: gi|17400411|gb|BM177193.1|BM177193
genomic: CAATATTCTCGATTTGTATATTTGgtatgttcca ... tggtcattagGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAG
EST: CACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTG GCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAG
genomic: CACAAACATTGCCGATGTTGTTTGCTCAATATTCTCGATTTGTATATTTGgtatgttcca ... tggtcattagGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAG
tgtggagatggtcttgtcttgttcctcaaatcattctgtcttgtttggtcattagGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAG
tcttgttt CT-rich tract
aaatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacagtttttctagttttacacctctggtaatatagctcaattgtgtggagatggtcttgtcttgttcctcaaatcattctgtcttgtttggtcattagGCTTCTGGGAATGCAGAGAAGGCAAGGCAGATTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAG
- - - - - - - - - - cacctct
- - - - - - - - - - - - - - - - - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtc