Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgatgtgcatgcacaaaaaactgaacctaaactattccagacatgatggattcactcatcaaaattattaatcttcagctcattctttcgtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCAC

Basic information

species Glycine max
transcript GLYMA03G28320.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G28320.1 (Glycine max), 3'ss of exon 11
lower sequence: LOC_Os03g20310.4 (Oryza sativa), 3'ss of exon 8
----atgatgtgcatgcacaaaaaactgaacctaaactattccagacatgatggattcactcatcaaaattattaatcttcagctcattctttcgtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCAC
     |    | | |           ||| ||  | | | | | |  |   |    | || | |     || | ||     || ||     ||| |  | | ||||||||||| ||||||||||||| ||||| |||||||  |||||  | || | | | ||| | || |||||||| ||||| ||   |||||| |||||||
tgtgttccctttcttatttgtgcttttgatcccgagcaagttctgcaagttttagatgaccctttttttttctgaag----agttctaatcttctttctgccagGCTGACAATTTGCGGCAGCAGACTTTACATCAAATGCAGCGAATTCTGACAATCCGACAAGCTGCCCGTGCTCTACTTGCAATACATGATTACTTCTCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10254538|gb|BE822304.1|BE822304
EST:     TGGCTATNNCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAG                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
genomic: TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
EST: gi|24135626|gb|BU926136.1|BU926136
EST:     TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAG                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCCGA-TATTAAC
genomic: TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTC-GAATATTAAC
EST: gi|254326605|gb|GR841197.1|GR841197
EST:     TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAG                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
genomic: TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
EST: gi|254316491|gb|GR828028.1|GR828028
EST:     TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAG                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
genomic: TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
EST: gi|57575242|gb|CX548217.1|CX548217
EST:     TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAG                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
genomic: TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
EST: gi|15816144|gb|BI788419.1|BI788419
EST:     TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAG                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
genomic: TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
EST: gi|6913075|gb|AW394605.1|AW394605
EST:     GGTTTCTTCACCAG                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
genomic: GGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
EST: gi|254316490|gb|GR828027.1|GR828027
EST:     TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAC                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
genomic: TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
EST: gi|19269047|gb|BM885303.1|BM885303
EST:     TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAG                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
genomic: TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
EST: gi|193484781|gb|FK449933.1|FK449933
EST:     TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAG                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
genomic: TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
EST: gi|51337854|gb|CO981720.1|CO981720
EST:     TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAG                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
genomic: TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
EST: gi|57574999|gb|CX547974.1|CX547974
EST:     TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAG                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
genomic: TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
EST: gi|9903361|gb|BE612329.1|BE612329
EST:     TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAG                         GCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG
genomic: TGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGgtacgctcat ... gtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatggattcactcatcaaaattattaatcttcagctcattctttcgtgttactagGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCAC
                     tattaat  putative branch site (score: 2)
                                      ttctttcgt  putative PPT
             atcaaaattattaatc  TA-rich tract