1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgaaaatttacgtatattgaatcggttcaactggcttacatgtattttctcttgcataatgaaagtatggataatgagcaagtcatcaattagtttaccgcacgtggaatttctgtagtgtatagaattttgcttttctatgatctaataaggtggtgtttgtttgattcactcttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTTCAAACCACAATATGTTGGGGCCAAAGAGACCGCTGGTTGAGCTATGATG
species | Glycine max |
transcript | GLYMA03G23870.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTTEST: gi|31311135|gb|CD396338.1|CD396338
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
EST: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTTEST: gi|27425710|gb|CA937230.1|CA937230
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
EST: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTTEST: gi|31456481|gb|CD398509.1|CD398509
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
EST: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTTEST: gi|22525661|gb|BU084472.1|BU084472
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
EST: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTTEST: gi|22932756|gb|BU549895.1|BU549895
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
EST: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTTEST: gi|15287093|gb|BI470984.1|BI470984
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
EST: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAG AGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
genomic: CTGGCTTTGCTCTAAATGCAATTAGCAGGAACATGAACAAAGACCTCAAGgtgaaaattt ... cttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTT
tttgcttttctatgatctaataaggtggtgtttgtttgattcactcttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTTCAAACCACAATATGTTGGGGCCAAAGAGACCGCTGGTTGAGCTATGATG
ttcactcttccgct CT-rich tract
atctaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaatttacgtatattgaatcggttcaactggcttacatgtattttctcttgcataatgaaagtatggataatgagcaagtcatcaattagtttaccgcacgtggaatttctgtagtgtatagaattttgcttttctatgatctaataaggtggtgtttgtttgattcactcttccgctagAGATATGTGGAGGATATGCAAACAATACTGAAGGACAAAAATTGGAAAGTTCAAACCACAATATGTTGGGGCCAAAGAGACCGCTGGTTGAGCTATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA