1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggctttatggatattagtatttttctagtgtgactttctccatttgttttctttttatgtaagatgttcctgtactgatgtccatgttaatcatgtgcagGCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAATCTTACAATCCCGGAGGGGATATTATCTTTACGGATGATGTTAGCTTTG
species | Glycine max |
transcript | GLYMA03G22740.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAG GCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAAEST: gi|12690334|gb|BG156670.1|BG156670
genomic: AGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGgttactttct ... tcatgtgcagGCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAA
EST: AGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAG GCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAAEST: gi|209718658|gb|BW674758.1|BW674758
genomic: AGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGgttactttct ... tcatgtgcagGCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAA
EST: AGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAG GCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAA
genomic: AGAGATTTCCTGTACCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGgttactttct ... tcatgtgcagGCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAA
gttttctttttatgtaagatgttcctgtactgatgtccatgttaatcatgtgcagGCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAATCTTACAATCCCGGAGGGGATATTATCTTTACGGATGATGTTAGCTTTG
tttttatgtaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctttatggatattagtatttttctagtgtgactttctccatttgttttctttttatgtaagatgttcctgtactgatgtccatgttaatcatgtgcagGCTCGATTTTTACTGGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAATCTTACAATCCCGGAGGGGATATTATCTTTACGGATGATGTTAGCTTTG
- - - - - - - - - - - - - -gtgtgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgtt