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gtaggttgacctccaaattatgtgctgttacctagttgtagtaaatcaatttatctattgagcatactccattaaattcaatgatcccacataaagagtctaaatcaaatactatttgattattttttagCTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACTTGAGATTTCATTCTCGAGGGAAGGAAATAAATGATGCTGATATTTTAGA
species | Glycine max |
transcript | GLYMA03G22450.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAATGTTGCTGGAAATGACATTGTGCAGGGAAATAAAAAATTAATACTAG CTTATCTGTGGCAATTGATGCGATACAATAEST: gi|208068976|gb|GD864180.1|GD864180
genomic: AAATGTTGCTGGAAATGACATTGTGCAGGGAAATAAAAAATTAATACTAGgtaggttgac ... tattttttagCTTATCTGTGGCAATTGATGCGATACAATA
EST: AAATGTTGCTGGAAATGACATTGTGCAGGGAAATAAAAAATTAATACTAG CTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACTEST: gi|9258812|gb|BE346959.1|BE346959
genomic: AAATGTTGCTGGAAATGACATTGTGCAGGGAAATAAAAAATTAATACTAGgtaggttgac ... tattttttagCTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACT
EST: AAAAATTAATACTAG CTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACTEST: gi|193611213|gb|FK561723.1|FK561723
genomic: AAAAATTAATACTAGgtaggttgac ... tattttttagCTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACT
EST: TGACATTGTGCAGGGAAATAAAAAATTAATACTAG CTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACTEST: gi|208059512|gb|GD858326.1|GD858326
genomic: TGACATTGTGCAGGGAAATAAAAAATTAATACTAGgtaggttgac ... tattttttagCTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACT
EST: TGTTTGTCTTGGAAATGACATTGTGCAGGGAAATAAAAAATTAATACTAG CTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACTEST: gi|193573679|gb|FK531013.1|FK531013
genomic: TG-TTG-C-TGGAAATGACATTGTGCAGGGAAATAAAAAATTAATACTAGgtaggttgac ... tattttttagCTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACT
EST: AAATGTTGCTGGAAATGACATTGTGCAGGGAAATAAAAAATTAAT-CTAG CTTATCTGTGGCAATTGATGCGATACAATAEST: gi|193438158|gb|FK402177.1|FK402177
genomic: AAATGTTGCTGGAAATGACATTGTGCAGGGAAATAAAAAATTAATACTAGgtaggttgac ... tattttttagCTTATCTGTGGCAATTGATGCGATACAATA
EST: CTGGAAATGACATTGTGTCAGGGAAATAAAAAATTAATACTAG CTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACT
genomic: CTGGAAATGACATTGTG-CAGGGAAATAAAAAATTAATACTAGgtaggttgac ... tattttttagCTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACT
attcaatgatcccacataaagagtctaaatcaaatactatttgattattttttagCTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACTTGAGATTTCATTCTCGAGGGAAGGAAATAAATGATGCTGATATTTTAGA
ttatttttt CT-rich tract
tctaaatcaaatacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttgacctccaaattatgtgctgttacctagttgtagtaaatcaatttatctattgagcatactccattaaattcaatgatcccacataaagagtctaaatcaaatactatttgattattttttagCTTATCTGTGGCAATTGATGCGATACAATATCCTACAACTTCTCAAGAACTTGAGATTTCATTCTCGAGGGAAGGAAATAAATGATGCTGATATTTTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT