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gtagaattggaagtcataatacatacctctcctactcatcttcgacttccttgtattactgattttttggtgatagaatacctgaccacattgtttccttgtaaaatgttttagatagatggaaagggtaatggtctttcatcatgttaacagttcatggacttattctattgataactaactttacagGTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGCAATGACTGCCTACGGTTTAG
species | Glycine max |
transcript | GLYMA03G01100.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAG GTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGCEST: gi|151409520|gb|EV279328.1|EV279328
genomic: GGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattgg ... aactttacagGTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGC
EST: GGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAG GTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGCEST: gi|254319501|gb|GR829013.1|GR829013
genomic: GGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattgg ... aactttacagGTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGC
EST: GGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAG GTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGC
genomic: GGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattgg ... aactttacagGTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGC
tctttcatcatgttaacagttcatggacttattctattgataactaactttacagGTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGCAATGACTGCCTACGGTTTAG
aactaac putative branch site (score: 1)
ttattctattgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaattggaagtcataatacatacctctcctactcatcttcgacttccttgtattactgattttttggtgatagaatacctgaccacattgtttccttgtaaaatgttttagatagatggaaagggtaatggtctttcatcatgttaacagttcatggacttattctattgataactaactttacagGTATGATTGGTTGGCAAAGAAGAACCTTCGGGCTGGATACTTCTTGTGGGCAATGACTGCCTACGGTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA