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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgaaagaaacttctcccatgctaatgcaaaatgcagtaccaaaaaaacttcagattccccaacattaaaatatcatttctgacacacaatactcttcatgttccagTCTTGTGCAGGGAGGTGTAGACTCCAGAAATTTGTTCCACAACTATATCATGGTGTGGATACAGGATATGCAACTTAGTTTACTTGATTTATGTAAAGCA

Basic information

species Glycine max
transcript GLYMA02G47930.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G47930.1 (Glycine max), 3'ss of exon 11
lower sequence: AT5G48310.2 (Arabidopsis thaliana), 3'ss of exon 14
gtttgtgaaagaaacttctcccatgctaatgcaaaatgcagtaccaaaa--aaacttcagattccccaacattaaaatatcatttctgacacacaatactcttcatgttccagTCTTGTGCAGGGAGGTGTAGACTCCAGAAATTTGTTCCACAACTATATCATGGTGTGGATACAGGATATGCAACTTAGTTTACTTGATTTATGTAAAGCA
                             |  | | |    |  |  ||  || |   | |||       | | |    |  | | | || |     | | |  ||    ||| |  || || || ||||||||||| ||    |||||||||||||| || ||||| |||||||| |||||| |||||||  |||||||   ||| | ||||
---------------------------gtttgacattatcatttcggaatcaatcacaatatttgtgggaactcattctttctctttaac-cgtttcattttatattacacagCCCAGTACATGGTGGTGTAGACTCTAGGGGGTTGTTCCACAACTACATAATGGTTTGGATACATGATATGGAACTTAGACTACTTGACCGATGCAGAGCA

upper sequence: GLYMA02G47930.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv12s0057g01510.t01 (Vitis vinifera), 3'ss of exon 12
gtttgtgaaagaaacttctc-ccatgctaatgcaaaatgcagt--accaaaaa-------------aacttcagattccccaacattaaaatatcatttctgacacacaatac-tcttcatgttccagTCTTGTGCAGGGAGGTGTAGACTCCAGAAATTTGTTCCACAACTATATCATGGTGTGGATACAGGATATGCAACTTAGTTTACTTGATTTATGTAAAGCA
||||||| | ||| ||||       |  ||    |||||  |   ||  | ||             || |||| | |    || |   |||   | | | ||  |||  |||  | ||  || | ||| |  |||||||| ||||| ||||| |  ||||||||||| || || || ||||||||||||||||||||||| || |  || |||||  | || ||||||
gtttgtggatgaagcttcctattgggagaaaaagaaatgttgccaactgagaatgtgaaggcagctaatttcataatatataaaaactaaaagccttctttgtgacattatatgtttttttgcttcagGCCAGTGCAGGGTGGTGTTGACTCAAAGAATTTGTTCCATAATTACATAATGGTGTGGATACAGGATATGCAGCTAAACTTGCTTGAGCTCTGCAAAGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattccccaacattaaaatatcatttctgacacacaatactcttcatgttccagTCTTGTGCAGGGAGGTGTAGACTCCAGAAATTTGTTCCACAACTATATCATGGTGTGGATACAGGATATGCAACTTAGTTTACTTGATTTATGTAAAGCA
                         ttctgac  putative branch site (score: 2)
                                      tactcttc  putative PPT
         aacattaaaatatcat  TA-rich tract